Variant report

Variant	rs16928462
Chromosome Location	chr11:36179633-36179634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10836507	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12576603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918021	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56370337	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7111826	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs72935533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
2	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
3	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
4	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
5	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
6	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
8	chr11:36175000-36180000	Enhancers	Fetal Lung	lung
9	chr11:36175000-36184000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:36175200-36183800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:36175400-36181400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:36175600-36184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:36175600-36184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:36175800-36179800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:36175800-36180000	Enhancers	Fetal Muscle Leg	muscle
16	chr11:36176000-36179800	Enhancers	HUVEC	blood vessel
17	chr11:36176600-36184000	Weak transcription	Right Ventricle	heart
18	chr11:36176800-36181400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:36176800-36181400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:36177800-36181200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:36178000-36181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:36178000-36184000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:36178200-36181400	Weak transcription	Lung	lung
24	chr11:36178200-36183200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:36178200-36186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:36178200-36187200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:36178400-36179800	Enhancers	Brain Anterior Caudate	brain
28	chr11:36178400-36179800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:36178400-36181200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:36178400-36181600	Weak transcription	Fetal Kidney	kidney
31	chr11:36178400-36183200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:36178400-36183800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:36178600-36182800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:36178600-36184000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:36178800-36181400	Weak transcription	Fetal Heart	heart
36	chr11:36178800-36182600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:36178800-36184000	Weak transcription	Brain Substantia Nigra	brain
38	chr11:36179000-36181200	Weak transcription	Fetal Brain Female	brain
39	chr11:36179000-36182400	Weak transcription	HMEC	breast
40	chr11:36179000-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:36179000-36183800	Weak transcription	Adipose Nuclei	Adipose
42	chr11:36179000-36184400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:36179200-36181400	Weak transcription	Fetal Brain Male	brain
44	chr11:36179200-36183400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:36179200-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:36179200-36183800	Weak transcription	NHLF	lung
47	chr11:36179200-36185600	Weak transcription	NHEK	skin
48	chr11:36179400-36184000	Weak transcription	Left Ventricle	heart
49	chr11:36179400-36184000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:36179400-36184000	Weak transcription	NHDF-Ad	bronchial

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