Variant report

Variant	rs16928451
Chromosome Location	chr11:36174992-36174993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836507	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11033457	0.85[TSI][hapmap]
rs12222421	0.85[TSI][hapmap]
rs12576603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918021	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56370337	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7111826	1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs72935533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36163800-36176800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:36169000-36175000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:36169000-36178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:36170000-36175400	Enhancers	NHDF-Ad	bronchial
5	chr11:36170200-36175600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:36170400-36177000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:36170600-36175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:36171400-36175200	Weak transcription	Fetal Stomach	stomach
9	chr11:36171400-36177200	Weak transcription	Aorta	Aorta
10	chr11:36171400-36177200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
12	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
13	chr11:36171800-36175800	Weak transcription	Left Ventricle	heart
14	chr11:36171800-36176800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:36171800-36177800	Weak transcription	Esophagus	oesophagus
16	chr11:36172000-36176400	Weak transcription	Fetal Heart	heart
17	chr11:36172000-36176400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:36172000-36177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
20	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
21	chr11:36172600-36177400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
23	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:36172800-36177600	Weak transcription	A549	lung
25	chr11:36172800-36177600	Weak transcription	NH-A	brain
26	chr11:36173000-36175200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:36173000-36176400	Weak transcription	NHLF	lung
28	chr11:36173000-36176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:36173000-36177200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:36173000-36177200	Weak transcription	HSMM	muscle
31	chr11:36173000-36177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
33	chr11:36173200-36175400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:36173200-36175800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:36173200-36175800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:36173200-36176400	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:36173200-36177000	Weak transcription	NHEK	skin
38	chr11:36173200-36177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:36173400-36176000	Weak transcription	HUVEC	blood vessel
40	chr11:36173600-36176200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:36173600-36177400	Weak transcription	HMEC	breast
42	chr11:36173600-36179600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr11:36174000-36175800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:36174200-36175000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr11:36174200-36175000	Enhancers	Adipose Nuclei	Adipose
46	chr11:36174200-36177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:36174400-36175000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:36174400-36175200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr11:36174400-36175200	Enhancers	H9 Cell Line	embryonic stem cell
50	chr11:36174400-36175600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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