Variant report

Variant	rs10836522
Chromosome Location	chr11:36247479-36247480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36237059..36240036-chr11:36245680..36247717,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033499	0.86[ASN][1000 genomes]
rs11033502	0.93[ASN][1000 genomes]
rs11551022	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12275029	0.89[ASN][1000 genomes]
rs16928593	0.89[ASN][1000 genomes]
rs55680721	0.89[ASN][1000 genomes]
rs56290727	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36219200-36248600	Weak transcription	Ovary	ovary
3	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
5	chr11:36234800-36248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:36234800-36254000	Weak transcription	Right Atrium	heart
7	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:36237000-36248600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:36237000-36248600	Weak transcription	Esophagus	oesophagus
11	chr11:36237800-36248600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:36237800-36250600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:36238600-36248800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:36239800-36252200	Weak transcription	Hela-S3	cervix
15	chr11:36240400-36253800	Weak transcription	Psoas Muscle	Psoas
16	chr11:36242000-36249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:36242000-36249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:36242000-36249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:36242200-36248200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:36242200-36248600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:36242200-36249000	Weak transcription	HSMM	muscle
22	chr11:36242400-36247800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:36243800-36254800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:36244400-36247800	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:36244400-36251800	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:36244600-36251800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:36244600-36251800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:36244600-36253800	Weak transcription	Brain Angular Gyrus	brain
29	chr11:36244800-36247800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:36244800-36251200	Weak transcription	Fetal Kidney	kidney
31	chr11:36245000-36248800	Weak transcription	Adipose Nuclei	Adipose
32	chr11:36245000-36252200	Weak transcription	Fetal Lung	lung
33	chr11:36245000-36253400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:36245000-36260800	Weak transcription	Fetal Brain Male	brain
35	chr11:36245200-36248600	Weak transcription	Fetal Intestine Small	intestine
36	chr11:36245200-36248800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:36245200-36248800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:36245200-36248800	Weak transcription	Fetal Brain Female	brain
39	chr11:36245200-36252800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:36245200-36261400	Weak transcription	NHEK	skin
41	chr11:36246000-36247600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:36246000-36247800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:36246200-36248200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:36246200-36248200	Weak transcription	Brain Germinal Matrix	brain
45	chr11:36246400-36248600	Weak transcription	Fetal Stomach	stomach
46	chr11:36246400-36252400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:36246600-36247800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:36246600-36250000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:36246800-36248800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr11:36246800-36257400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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