Variant report

Variant	rs11033499
Chromosome Location	chr11:36237317-36237318
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36235314..36237766-chr11:36240242..36242085,2	MCF-7	breast:
2	chr11:36237059..36240036-chr11:36245680..36247717,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10836522	0.86[ASN][1000 genomes]
rs11033502	0.95[CEU][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11551022	0.83[ASN][1000 genomes]
rs12275029	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16928593	0.83[ASN][1000 genomes]
rs55680721	0.83[ASN][1000 genomes]
rs56290727	0.86[ASN][1000 genomes]
rs7943733	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11033499	EIF3M	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36219200-36248600	Weak transcription	Ovary	ovary
3	chr11:36220600-36241600	Weak transcription	HSMM	muscle
4	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:36222000-36239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
7	chr11:36226800-36241600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:36227000-36238400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:36231400-36237800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:36232200-36241400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:36232800-36237800	Enhancers	Brain Substantia Nigra	brain
12	chr11:36233000-36237600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:36233200-36237600	Enhancers	Brain Anterior Caudate	brain
14	chr11:36233400-36237800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:36233800-36237800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr11:36234000-36244600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:36234800-36241000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:36234800-36248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:36234800-36254000	Weak transcription	Right Atrium	heart
20	chr11:36235000-36237800	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:36235200-36237600	Enhancers	Brain Germinal Matrix	brain
22	chr11:36235200-36238800	Enhancers	Fetal Intestine Small	intestine
23	chr11:36235400-36237400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:36235400-36237600	Enhancers	Fetal Brain Female	brain
25	chr11:36235800-36238600	Enhancers	Fetal Intestine Large	intestine
26	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:36236400-36237800	Enhancers	Fetal Kidney	kidney
28	chr11:36236800-36238800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:36237000-36248600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:36237000-36248600	Weak transcription	Esophagus	oesophagus
32	chr11:36237200-36237400	Genic enhancers	Fetal Muscle Leg	muscle
33	chr11:36237200-36239000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:36237200-36241600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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