Variant report

Variant	rs10836535
Chromosome Location	chr11:36338370-36338371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1562324	0.82[EUR][1000 genomes]
rs1900333	0.82[EUR][1000 genomes]
rs1900334	0.82[EUR][1000 genomes]
rs4290197	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755449	0.81[EUR][1000 genomes]
rs61878692	0.85[ASN][1000 genomes]
rs7109880	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7114403	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7124910	0.82[EUR][1000 genomes]
rs7128640	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7945962	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36332000-36338600	Weak transcription	Gastric	stomach
2	chr11:36334200-36339800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:36335200-36339600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:36335400-36340200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:36335600-36339200	Weak transcription	Colonic Mucosa	Colon
6	chr11:36336200-36340000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:36336200-36340200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:36336400-36338600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:36336800-36343400	Weak transcription	Fetal Intestine Small	intestine
10	chr11:36337200-36340000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:36337400-36339000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:36337800-36338400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:36337800-36339800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:36337800-36340200	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:36338000-36338600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:36338000-36340000	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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