Variant report

Variant	rs7114403
Chromosome Location	chr11:36361607-36361608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36359504..36362361-chr11:36368663..36371439,2	K562	blood:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742370	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836535	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1562324	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900333	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900334	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900337	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2433192	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2467080	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290197	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4755449	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7109880	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124910	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948150	0.86[ASN][1000 genomes]
rs7945962	0.96[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36360800-36364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36361000-36365000	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:36361000-36365000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:36361200-36362000	Enhancers	Brain Anterior Caudate	brain
5	chr11:36361200-36362200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:36361200-36362400	Enhancers	Brain Angular Gyrus	brain
7	chr11:36361200-36362600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:36361200-36362600	Enhancers	Fetal Thymus	thymus
9	chr11:36361200-36362800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:36361200-36365200	Enhancers	Brain Substantia Nigra	brain
11	chr11:36361400-36361800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:36361400-36362000	Enhancers	Fetal Brain Female	brain
13	chr11:36361400-36362200	Enhancers	Fetal Intestine Large	intestine
14	chr11:36361400-36362600	Enhancers	Fetal Kidney	kidney
15	chr11:36361400-36362800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:36361400-36363000	Enhancers	Brain Hippocampus Middle	brain
17	chr11:36361400-36363800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:36361400-36365400	Enhancers	Fetal Intestine Small	intestine
19	chr11:36361600-36362000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:36361600-36362200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:36361600-36362200	Enhancers	Fetal Brain Male	brain
22	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:36361600-36363800	Weak transcription	Spleen	Spleen

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