Variant report

Variant	rs2467080
Chromosome Location	chr11:36368327-36368328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501152	0.80[CHB][hapmap]
rs10742370	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1562324	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1900333	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900334	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1900337	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2422247	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2433192	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290197	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755449	0.81[CEU][hapmap]
rs7109880	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114403	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124910	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128640	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72948150	0.83[ASN][1000 genomes]
rs7945962	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36362800-36371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36365200-36374000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:36365200-36374200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:36367000-36375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:36367400-36369400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:36367400-36371800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:36367400-36375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:36367400-36375600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:36367400-36375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:36367600-36368400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:36367600-36369600	Enhancers	Fetal Intestine Small	intestine
14	chr11:36367600-36375800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:36367800-36375800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:36368000-36368400	Active TSS	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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