Variant report

Variant	rs10501152
Chromosome Location	chr11:36376782-36376783
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36376545..36378977-chr11:36387262..36390034,2	K562	blood:
2	chr11:36376592..36377186-chr11:36514048..36514915,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10501151	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11033573	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11600067	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603150	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605962	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11606433	1.00[YRI][hapmap]
rs12575749	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2467080	0.80[CHB][hapmap]
rs35923330	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61878710	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929961	0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36373800-36376800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:36374000-36376800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:36374200-36377800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:36374200-36379400	Enhancers	Brain Substantia Nigra	brain
7	chr11:36374400-36376800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:36374600-36377000	Enhancers	NHEK	skin
9	chr11:36374800-36378400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:36374800-36382000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:36375200-36377000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:36375200-36377200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:36375200-36378000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:36375400-36376800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:36375400-36376800	Enhancers	Fetal Intestine Small	intestine
16	chr11:36375400-36376800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:36375400-36376800	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:36375400-36378800	Enhancers	Fetal Intestine Large	intestine
19	chr11:36375400-36379800	Enhancers	Primary B cells from peripheral blood	blood
20	chr11:36375600-36376800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:36375600-36376800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:36375600-36377000	Enhancers	HMEC	breast
23	chr11:36375600-36377000	Enhancers	Osteobl	bone
24	chr11:36375600-36377400	Weak transcription	Spleen	Spleen
25	chr11:36375800-36376800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:36375800-36376800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:36375800-36376800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:36375800-36377000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:36375800-36377000	Enhancers	HSMM	muscle
30	chr11:36375800-36377000	Enhancers	NH-A	brain
31	chr11:36375800-36378600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:36376000-36376800	Enhancers	NHDF-Ad	bronchial
33	chr11:36376000-36377000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:36376000-36381600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:36376000-36381600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:36376200-36376800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:36376200-36376800	Enhancers	Hela-S3	cervix
38	chr11:36376200-36380800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:36376400-36376800	Enhancers	A549	lung
40	chr11:36376400-36377400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:36376400-36377800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:36376400-36381000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr11:36376400-36382000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:36376600-36376800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:36376600-36376800	Enhancers	HSMMtube	muscle
46	chr11:36376600-36377600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:36376600-36378200	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:36376600-36379800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:36376600-36380600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links