Variant report

Variant	rs11033573
Chromosome Location	chr11:36383808-36383809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10501151	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10501152	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10501153	0.94[ASN][1000 genomes]
rs11600067	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603150	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11605962	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12575749	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35923330	0.96[ASN][1000 genomes]
rs61878710	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7929961	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:36380600-36385200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:36380800-36384400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:36381200-36385600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr11:36381400-36384200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:36381400-36384200	Weak transcription	Right Atrium	heart
8	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:36381600-36388400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:36382000-36385000	Enhancers	Liver	Liver
12	chr11:36382000-36385800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:36382000-36385800	Enhancers	Fetal Thymus	thymus
14	chr11:36382000-36386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:36382000-36386400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr11:36382000-36386600	Enhancers	Fetal Intestine Small	intestine
17	chr11:36382000-36386800	Enhancers	Fetal Intestine Large	intestine
18	chr11:36382000-36387800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:36382200-36385400	Enhancers	HSMM	muscle
20	chr11:36382400-36384000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:36382400-36385000	Weak transcription	Stomach Mucosa	stomach
22	chr11:36382400-36386800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:36382400-36388600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:36382600-36384400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:36382600-36384400	Weak transcription	Colonic Mucosa	Colon
26	chr11:36382600-36384800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:36382600-36384800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:36382600-36385000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:36382600-36385200	Weak transcription	Thymus	Thymus
30	chr11:36382800-36384600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:36382800-36384600	Weak transcription	GM12878-XiMat	blood
32	chr11:36382800-36387200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:36382800-36388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
35	chr11:36383200-36384000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr11:36383200-36384000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr11:36383200-36384000	Bivalent Enhancer	Fetal Lung	lung
38	chr11:36383200-36384600	Enhancers	Fetal Brain Female	brain
39	chr11:36383200-36385200	Enhancers	Osteobl	bone
40	chr11:36383200-36385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:36383200-36385600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:36383200-36386400	Enhancers	HSMMtube	muscle
43	chr11:36383400-36384000	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr11:36383400-36384000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
45	chr11:36383400-36384000	Active TSS	NHDF-Ad	bronchial
46	chr11:36383400-36384400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:36383400-36384400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr11:36383400-36384400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:36383400-36384400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr11:36383400-36385200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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