Variant report

Variant	rs11605962
Chromosome Location	chr11:36380093-36380094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:36380032-36380253	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34926486..34928206-chr11:36379103..36382037,2	K562	blood:

Variant related genes	Relation type
PRR5L	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10501151	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10501152	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10501153	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11033573	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600067	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603150	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575749	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35923330	0.94[ASN][1000 genomes]
rs61878710	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7929961	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36374800-36382000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:36376000-36381600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:36376000-36381600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:36376200-36380800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:36376400-36381000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:36376400-36382000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:36376600-36380600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:36376800-36380600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:36376800-36381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:36376800-36382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:36376800-36382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:36376800-36382000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:36376800-36382200	Weak transcription	NHDF-Ad	bronchial
16	chr11:36376800-36382400	Weak transcription	Hela-S3	cervix
17	chr11:36376800-36383200	Weak transcription	HSMMtube	muscle
18	chr11:36377000-36381800	Weak transcription	NHEK	skin
19	chr11:36377000-36382000	Weak transcription	HMEC	breast
20	chr11:36377000-36382200	Weak transcription	HSMM	muscle
21	chr11:36377000-36382400	Weak transcription	NH-A	brain
22	chr11:36377200-36380200	Enhancers	Primary B cells from cord blood	blood
23	chr11:36377200-36382000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:36377400-36380800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:36377800-36381800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:36378000-36383400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:36378200-36382000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:36378200-36384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:36378400-36382200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:36378400-36382200	Weak transcription	Adipose Nuclei	Adipose
32	chr11:36378400-36383600	Weak transcription	Spleen	Spleen
33	chr11:36378600-36381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:36378600-36382000	Weak transcription	Fetal Intestine Small	intestine
35	chr11:36378600-36382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:36378600-36382400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:36378800-36382000	Weak transcription	Fetal Intestine Large	intestine
38	chr11:36378800-36382200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:36379000-36380400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:36379200-36380600	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:36379200-36382000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:36379200-36382000	Weak transcription	Colonic Mucosa	Colon
43	chr11:36379400-36381800	Weak transcription	Brain Substantia Nigra	brain
44	chr11:36379600-36380600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:36379600-36381200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:36379600-36381400	Weak transcription	GM12878-XiMat	blood
47	chr11:36379800-36380600	Enhancers	Fetal Thymus	thymus
48	chr11:36379800-36381600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:36379800-36381600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:36379800-36381600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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