Variant report

Variant	rs10837878
Chromosome Location	chr11:5370278-5370279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5337010..5339667-chr11:5367362..5370323,2	K562	blood:
2	chr11:5369590..5371367-chr11:5374637..5376973,2	K562	blood:

Variant related genes	Relation type
ENSG00000230087	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10768828	0.98[ASN][1000 genomes]
rs10768830	0.85[ASN][1000 genomes]
rs10768831	0.98[ASN][1000 genomes]
rs10837867	0.98[ASN][1000 genomes]
rs10837868	0.98[ASN][1000 genomes]
rs10837870	0.98[ASN][1000 genomes]
rs10837871	0.98[ASN][1000 genomes]
rs10837872	0.98[ASN][1000 genomes]
rs10837873	0.98[ASN][1000 genomes]
rs10837874	0.98[ASN][1000 genomes]
rs11036923	0.98[ASN][1000 genomes]
rs11036924	0.98[ASN][1000 genomes]
rs11036925	0.98[ASN][1000 genomes]
rs11036927	0.96[ASN][1000 genomes]
rs11036930	0.98[ASN][1000 genomes]
rs11036936	0.98[ASN][1000 genomes]
rs11601176	0.84[ASN][1000 genomes]
rs11601662	0.84[ASN][1000 genomes]
rs11603059	0.84[ASN][1000 genomes]
rs11604556	0.88[ASN][1000 genomes]
rs11604883	0.84[ASN][1000 genomes]
rs11607365	0.84[ASN][1000 genomes]
rs12275713	0.98[ASN][1000 genomes]
rs16913820	0.84[ASN][1000 genomes]
rs17271552	0.84[ASN][1000 genomes]
rs17271573	0.84[ASN][1000 genomes]
rs17355605	0.84[ASN][1000 genomes]
rs17356328	0.84[ASN][1000 genomes]
rs17356507	0.84[ASN][1000 genomes]
rs17356535	0.84[ASN][1000 genomes]
rs1846320	0.84[ASN][1000 genomes]
rs28819138	0.84[ASN][1000 genomes]
rs4078480	0.85[ASN][1000 genomes]
rs4255565	0.98[ASN][1000 genomes]
rs4269953	0.85[ASN][1000 genomes]
rs4271412	0.85[ASN][1000 genomes]
rs4304811	0.98[ASN][1000 genomes]
rs4326830	0.96[ASN][1000 genomes]
rs4345997	0.88[ASN][1000 genomes]
rs4463873	0.88[ASN][1000 genomes]
rs4492850	0.88[ASN][1000 genomes]
rs4495917	0.98[ASN][1000 genomes]
rs4623930	0.85[ASN][1000 genomes]
rs4910764	0.84[ASN][1000 genomes]
rs5019249	0.98[ASN][1000 genomes]
rs7106330	0.88[ASN][1000 genomes]
rs7483786	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5365600-5382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:5367600-5371000	Weak transcription	Osteobl	bone
3	chr11:5369600-5371000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:5369800-5370400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:5369800-5370600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:5369800-5370600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:5370000-5370400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:5370000-5370400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:5370000-5370800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:5370200-5372800	Weak transcription	K562	blood
11	chr11:5370200-5376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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