Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10769153	0.93[ASN][1000 genomes]
rs10769154	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038480	0.83[ASN][1000 genomes]
rs1157786	0.86[ASN][1000 genomes]
rs12422148	0.83[ASN][1000 genomes]
rs1488667	0.84[ASN][1000 genomes]
rs1530869	0.81[ASN][1000 genomes]
rs1565222	0.83[ASN][1000 genomes]
rs17195431	0.82[ASN][1000 genomes]
rs1825934	0.82[ASN][1000 genomes]
rs2198151	0.81[ASN][1000 genomes]
rs2198153	0.81[ASN][1000 genomes]
rs2863700	0.82[ASN][1000 genomes]
rs4755992	0.84[ASN][1000 genomes]
rs4755993	0.85[ASN][1000 genomes]
rs4755995	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4755996	0.92[ASN][1000 genomes]
rs4755997	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4755998	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55713403	0.82[ASN][1000 genomes]
rs56681627	0.83[ASN][1000 genomes]
rs7115683	0.87[ASN][1000 genomes]
rs750995	0.82[ASN][1000 genomes]
rs7931481	0.83[ASN][1000 genomes]
rs7931858	0.83[ASN][1000 genomes]
rs7934345	0.83[ASN][1000 genomes]
rs896338	0.81[ASN][1000 genomes]
rs901900	0.83[ASN][1000 genomes]
rs9787814	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45490200-45510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:45503200-45506400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45504200-45506000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45504400-45505000	Enhancers	Brain Anterior Caudate	brain

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