Variant report

Variant	rs10838614
Chromosome Location	chr11:46733382-46733383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46731435..46734323-chr11:46734509..46736291,2	MCF-7	breast:
2	chr11:46720649..46724163-chr11:46731073..46734674,4	K562	blood:
3	chr11:46720873..46729098-chr11:46730484..46736465,14	K562	blood:
4	chr11:46726766..46729006-chr11:46732378..46735055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175213	Chromatin interaction
ENSG00000175220	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11038917	1.00[CHB][hapmap]
rs11038975	1.00[CHD][hapmap]
rs11601182	1.00[CHD][hapmap]
rs12797858	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12805342	1.00[CHD][hapmap]
rs7952678	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46723600-46739800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:46725200-46739600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:46725200-46739800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:46727600-46738000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:46727600-46739800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:46727800-46735600	Weak transcription	HUVEC	blood vessel
7	chr11:46727800-46736800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:46727800-46739400	Weak transcription	Stomach Mucosa	stomach
9	chr11:46728400-46735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:46728400-46735600	Weak transcription	HMEC	breast
11	chr11:46728400-46739800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:46728800-46745600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:46728800-46745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:46729000-46733600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:46729000-46739600	Weak transcription	Colonic Mucosa	Colon
16	chr11:46729000-46739600	Weak transcription	Lung	lung
17	chr11:46729000-46739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:46729200-46734600	Weak transcription	Thymus	Thymus
19	chr11:46729200-46739400	Weak transcription	Fetal Intestine Large	intestine
20	chr11:46729200-46739600	Weak transcription	Placenta	Placenta
21	chr11:46729200-46739600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:46729200-46739800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:46729200-46740000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:46729400-46734400	Weak transcription	HepG2	liver
25	chr11:46729400-46735600	Weak transcription	Hela-S3	cervix
26	chr11:46729400-46739600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:46729400-46739800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:46729600-46733400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:46729600-46734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:46729600-46735800	Weak transcription	NHEK	skin
31	chr11:46729600-46739600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:46729600-46739600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:46729600-46739600	Weak transcription	Pancreas	Pancrea
34	chr11:46729600-46739800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:46729600-46739800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:46729600-46739800	Weak transcription	Dnd41	blood
37	chr11:46729600-46740000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:46729600-46740000	Weak transcription	Right Ventricle	heart
39	chr11:46729600-46740600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:46729800-46734600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:46729800-46739400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:46730000-46734400	Weak transcription	Fetal Brain Female	brain
43	chr11:46730000-46734600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:46730000-46739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:46730000-46740000	Weak transcription	Gastric	stomach
46	chr11:46730200-46734400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:46730200-46734400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:46730200-46739400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:46730200-46739600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:46730200-46740600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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