Variant report

Variant	rs11038975
Chromosome Location	chr11:46732075-46732076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10838614	1.00[CHD][hapmap]
rs11038924	1.00[CEU][hapmap]
rs11601182	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs12287998	1.00[MEX][hapmap]
rs12576204	1.00[MEX][hapmap]
rs12797858	1.00[CHD][hapmap]
rs12805342	1.00[CHD][hapmap]
rs35569076	1.00[MEX][hapmap]
rs7952678	1.00[CHD][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46723600-46739800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:46723800-46733000	Strong transcription	Fetal Stomach	stomach
3	chr11:46724400-46732200	Weak transcription	Right Atrium	heart
4	chr11:46724400-46733200	Strong transcription	Fetal Intestine Small	intestine
5	chr11:46725200-46739600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:46725200-46739800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:46726600-46732800	Weak transcription	Psoas Muscle	Psoas
8	chr11:46727600-46738000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:46727600-46739800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:46727800-46732800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:46727800-46735600	Weak transcription	HUVEC	blood vessel
12	chr11:46727800-46736800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:46727800-46739400	Weak transcription	Stomach Mucosa	stomach
14	chr11:46728400-46735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:46728400-46735600	Weak transcription	HMEC	breast
16	chr11:46728400-46739800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:46728600-46732800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:46728800-46732200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:46728800-46732400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:46728800-46732800	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:46728800-46745600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:46728800-46745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:46729000-46732400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:46729000-46732400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:46729000-46732400	Weak transcription	HSMMtube	muscle
26	chr11:46729000-46732400	Weak transcription	NH-A	brain
27	chr11:46729000-46733600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:46729000-46739600	Weak transcription	Colonic Mucosa	Colon
29	chr11:46729000-46739600	Weak transcription	Lung	lung
30	chr11:46729000-46739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:46729200-46734600	Weak transcription	Thymus	Thymus
32	chr11:46729200-46739400	Weak transcription	Fetal Intestine Large	intestine
33	chr11:46729200-46739600	Weak transcription	Placenta	Placenta
34	chr11:46729200-46739600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:46729200-46739800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:46729200-46740000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:46729400-46732200	Weak transcription	Liver	Liver
38	chr11:46729400-46732400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:46729400-46732800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:46729400-46732800	Weak transcription	Esophagus	oesophagus
41	chr11:46729400-46734400	Weak transcription	HepG2	liver
42	chr11:46729400-46735600	Weak transcription	Hela-S3	cervix
43	chr11:46729400-46739600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:46729400-46739800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:46729600-46732200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:46729600-46732200	Weak transcription	Aorta	Aorta
47	chr11:46729600-46732200	Weak transcription	HSMM	muscle
48	chr11:46729600-46732200	Weak transcription	NHLF	lung
49	chr11:46729600-46732600	Weak transcription	Brain Angular Gyrus	brain
50	chr11:46729600-46732800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links