Variant report

Variant	rs10839998
Chromosome Location	chr11:8226417-8226418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8219696..8221882-chr11:8224030..8227139,3	K562	blood:
2	chr11:8218272..8221882-chr11:8224030..8226570,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10732513	0.85[AFR][1000 genomes]
rs10743061	0.90[AFR][1000 genomes]
rs11041805	0.99[ASN][1000 genomes]
rs11041806	0.97[ASN][1000 genomes]
rs12360753	0.93[ASN][1000 genomes]
rs12360775	0.98[ASN][1000 genomes]
rs12365206	0.97[ASN][1000 genomes]
rs1881229	0.84[EUR][1000 genomes]
rs3849990	0.84[AFR][1000 genomes]
rs4237767	0.81[ASN][1000 genomes]
rs4758311	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8222600-8227400	Enhancers	Primary B cells from cord blood	blood
2	chr11:8222600-8227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:8222600-8228000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:8223000-8227200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:8223000-8227200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8223000-8227400	Enhancers	Brain Germinal Matrix	brain
7	chr11:8223000-8228000	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:8223400-8227400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:8223600-8227000	Weak transcription	Fetal Thymus	thymus
11	chr11:8223600-8227600	Weak transcription	Left Ventricle	heart
12	chr11:8223600-8228000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:8223800-8228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:8224200-8227800	Weak transcription	Brain Anterior Caudate	brain
15	chr11:8224600-8227200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:8224600-8227400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:8224600-8227400	Weak transcription	Brain Substantia Nigra	brain
18	chr11:8224600-8227600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:8224800-8227200	Weak transcription	K562	blood
20	chr11:8224800-8227600	Weak transcription	Brain Angular Gyrus	brain
21	chr11:8225000-8227200	Weak transcription	Fetal Brain Male	brain
22	chr11:8225200-8227200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr11:8225200-8227600	Weak transcription	Fetal Brain Female	brain
24	chr11:8225200-8227800	Weak transcription	Spleen	Spleen
25	chr11:8225400-8227400	Weak transcription	Fetal Lung	lung
26	chr11:8225400-8228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:8225800-8227400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:8225800-8228000	Enhancers	Fetal Muscle Trunk	muscle
30	chr11:8226200-8228400	Enhancers	Adipose Nuclei	Adipose
31	chr11:8226400-8226600	Enhancers	Right Atrium	heart
32	chr11:8226400-8227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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