Variant report

Variant	rs4237767
Chromosome Location	chr11:8227813-8227814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10839998	0.81[ASN][1000 genomes]
rs11041805	0.86[EUR][1000 genomes]
rs11041806	0.89[EUR][1000 genomes]
rs12360753	0.90[EUR][1000 genomes]
rs12360775	0.89[EUR][1000 genomes]
rs12365206	0.89[EUR][1000 genomes]
rs4559683	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4627068	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4758311	0.89[EUR][1000 genomes]
rs7949087	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8222600-8228000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:8223000-8228000	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:8223600-8228000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:8223800-8228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:8225400-8228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:8225800-8228000	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:8226200-8228400	Enhancers	Adipose Nuclei	Adipose
10	chr11:8227000-8228800	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr11:8227200-8228000	Enhancers	Fetal Muscle Leg	muscle
12	chr11:8227200-8228000	Enhancers	Fetal Stomach	stomach
13	chr11:8227200-8229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:8227200-8229200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr11:8227200-8229200	Bivalent Enhancer	Placenta	Placenta
16	chr11:8227200-8229400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:8227200-8229600	Enhancers	Fetal Brain Male	brain
18	chr11:8227400-8228000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:8227400-8228000	Enhancers	Fetal Lung	lung
20	chr11:8227400-8228000	Flanking Active TSS	K562	blood
21	chr11:8227400-8228200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8227400-8228600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:8227400-8228800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr11:8227400-8229000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:8227600-8228000	Enhancers	Brain Angular Gyrus	brain
26	chr11:8227600-8228000	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr11:8227600-8228000	Active TSS	Brain Hippocampus Middle	brain
28	chr11:8227600-8228000	Enhancers	Right Atrium	heart
29	chr11:8227600-8228000	Enhancers	HUVEC	blood vessel
30	chr11:8227600-8228200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
31	chr11:8227600-8228600	Active TSS	Brain Substantia Nigra	brain
32	chr11:8227600-8229000	Bivalent Enhancer	Fetal Intestine Small	intestine
33	chr11:8227600-8229000	Enhancers	Left Ventricle	heart
34	chr11:8227600-8229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:8227600-8229400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
37	chr11:8227800-8228200	Active TSS	Brain Anterior Caudate	brain
38	chr11:8227800-8228200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr11:8227800-8228400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:8227800-8228600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr11:8227800-8228600	Active TSS	Brain Germinal Matrix	brain
42	chr11:8227800-8228600	Active TSS	Ovary	ovary
43	chr11:8227800-8228800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
44	chr11:8227800-8228800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr11:8227800-8228800	Active TSS	Fetal Brain Female	brain
46	chr11:8227800-8228800	Enhancers	Pancreas	Pancrea
47	chr11:8227800-8229400	Enhancers	Spleen	Spleen

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