Variant report

Variant	rs1084008
Chromosome Location	chr3:59843880-59843881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17493	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1872495	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs2629885	0.89[EUR][1000 genomes]
rs4679614	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs4679615	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs587775	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs598678	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs608582	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs650247	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs662910	0.93[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675411	0.82[EUR][1000 genomes]
rs675774	0.82[EUR][1000 genomes]
rs684753	0.93[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59834000-59848000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:59842800-59844000	Enhancers	Primary T cells from cord blood	blood
3	chr3:59842800-59844000	Enhancers	Thymus	Thymus
4	chr3:59843000-59844000	Enhancers	Stomach Mucosa	stomach
5	chr3:59843000-59844600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:59843600-59845000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:59843600-59853200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:59843600-59853200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:59843600-59854200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:59843800-59844200	Weak transcription	Fetal Thymus	thymus
11	chr3:59843800-59846800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:59843800-59848000	Weak transcription	Dnd41	blood
13	chr3:59843800-59852800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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