Variant report

Variant	rs2629885
Chromosome Location	chr3:59815682-59815683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10428174	0.81[EUR][1000 genomes]
rs1084008	0.89[EUR][1000 genomes]
rs17296496	1.00[AFR][1000 genomes]
rs17296701	1.00[AFR][1000 genomes]
rs17362087	1.00[AFR][1000 genomes]
rs17363039	1.00[AFR][1000 genomes]
rs17364716	1.00[AFR][1000 genomes]
rs1872495	0.98[EUR][1000 genomes]
rs4679614	0.98[EUR][1000 genomes]
rs4679615	0.97[EUR][1000 genomes]
rs587775	0.84[EUR][1000 genomes]
rs598678	0.88[EUR][1000 genomes]
rs608582	0.84[EUR][1000 genomes]
rs650247	0.84[EUR][1000 genomes]
rs662910	0.84[EUR][1000 genomes]
rs684753	0.83[EUR][1000 genomes]
rs744192	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv876837	chr3:59800539-59842644	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:59802800-59821200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:59807400-59816600	Weak transcription	Dnd41	blood
4	chr3:59811000-59817200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:59811800-59825200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:59812400-59825400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:59813000-59816400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:59814800-59817000	Enhancers	Fetal Heart	heart
9	chr3:59815000-59817000	Enhancers	Fetal Brain Male	brain
10	chr3:59815200-59817000	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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