Variant report

Variant	rs10840181
Chromosome Location	chr11:9174322-9174323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9166569..9169771-chr11:9171907..9174978,4	K562	blood:

Variant related genes	Relation type
ENSG00000184014	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10047438	0.92[ASN][1000 genomes]
rs1039210	0.90[ASN][1000 genomes]
rs10769991	0.82[ASN][1000 genomes]
rs10769995	0.88[ASN][1000 genomes]
rs10769996	0.90[ASN][1000 genomes]
rs10840176	0.82[ASN][1000 genomes]
rs10840178	0.81[ASN][1000 genomes]
rs10840179	0.82[ASN][1000 genomes]
rs10840182	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840183	0.90[ASN][1000 genomes]
rs10840185	0.84[ASN][1000 genomes]
rs11042199	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604616	0.81[ASN][1000 genomes]
rs17256375	0.84[ASN][1000 genomes]
rs1874822	0.82[ASN][1000 genomes]
rs1997628	0.83[ASN][1000 genomes]
rs2133217	0.90[ASN][1000 genomes]
rs2291839	0.95[ASN][1000 genomes]
rs2316088	0.93[EUR][1000 genomes]
rs56077948	0.97[ASN][1000 genomes]
rs56216908	0.89[ASN][1000 genomes]
rs7109745	0.89[ASN][1000 genomes]
rs7123970	0.88[ASN][1000 genomes]
rs7395347	0.82[ASN][1000 genomes]
rs7395846	0.81[ASN][1000 genomes]
rs7925418	0.83[ASN][1000 genomes]
rs7947251	0.81[ASN][1000 genomes]
rs956517	0.84[ASN][1000 genomes]
rs9888257	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9142600-9175000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9151800-9175800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr11:9152800-9175800	Strong transcription	Fetal Muscle Leg	muscle
4	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:9159000-9175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:9159400-9174400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
11	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:9160000-9177200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:9160200-9174600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr11:9160200-9174800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:9160200-9175600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:9160400-9175600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:9160600-9175400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:9161200-9175400	Strong transcription	Fetal Lung	lung
19	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
20	chr11:9161400-9175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:9161400-9179200	Strong transcription	Fetal Stomach	stomach
22	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:9162000-9175800	Strong transcription	Adipose Nuclei	Adipose
24	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:9162400-9175400	Strong transcription	Liver	Liver
27	chr11:9162400-9175400	Strong transcription	HepG2	liver
28	chr11:9163000-9174400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:9165600-9175400	Strong transcription	Brain Germinal Matrix	brain
30	chr11:9165800-9175200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
32	chr11:9166200-9174400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:9166400-9174400	Strong transcription	Fetal Heart	heart
34	chr11:9166400-9175600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr11:9167000-9175200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:9167600-9176000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:9167600-9176000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:9167800-9187600	Strong transcription	Placenta	Placenta
39	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
40	chr11:9169400-9175000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:9169400-9186400	Weak transcription	Fetal Intestine Small	intestine
42	chr11:9169600-9175400	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr11:9169600-9176000	Strong transcription	Hela-S3	cervix
44	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
45	chr11:9169800-9179400	Strong transcription	Brain Cingulate Gyrus	brain
46	chr11:9170200-9175400	Strong transcription	Brain Hippocampus Middle	brain
47	chr11:9170800-9174800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:9171000-9182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:9171600-9181800	Weak transcription	Fetal Brain Male	brain
50	chr11:9171800-9174600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links