Variant report

Variant	rs10840185
Chromosome Location	chr11:9187688-9187689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9186906..9189002-chr11:9452951..9454977,2	K562	blood:
2	chr11:9186873..9191628-chr11:9481180..9484823,7	K562	blood:
3	chr11:9185545..9188924-chr11:9481802..9484134,3	K562	blood:
4	chr11:9187382..9187964-chr19:34330945..34331773,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10047438	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1039210	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769991	0.84[ASN][1000 genomes]
rs10769994	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769995	0.93[ASN][1000 genomes]
rs10769996	0.94[ASN][1000 genomes]
rs10769997	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10769998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10769999	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10840175	0.83[EUR][1000 genomes]
rs10840176	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840178	0.83[ASN][1000 genomes]
rs10840179	0.84[ASN][1000 genomes]
rs10840181	0.84[ASN][1000 genomes]
rs10840182	0.84[ASN][1000 genomes]
rs10840183	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042189	0.82[EUR][1000 genomes]
rs11042195	0.87[ASN][1000 genomes]
rs11042199	0.84[ASN][1000 genomes]
rs11042200	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042211	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11604616	0.83[ASN][1000 genomes]
rs12291375	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17256375	0.89[ASN][1000 genomes]
rs1874822	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1997628	0.84[ASN][1000 genomes]
rs2133217	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2291839	0.85[ASN][1000 genomes]
rs2316087	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56077948	0.87[ASN][1000 genomes]
rs6486199	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7109745	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120239	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123970	0.93[ASN][1000 genomes]
rs7128469	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7394878	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7395151	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7395347	0.84[ASN][1000 genomes]
rs7395846	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7396705	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7925308	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7930507	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7931872	0.82[EUR][1000 genomes]
rs7947251	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9888257	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
3	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
6	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
7	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
8	chr11:9171800-9191400	Weak transcription	Psoas Muscle	Psoas
9	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:9172200-9199600	Weak transcription	Gastric	stomach
13	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9173400-9191000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:9174000-9194800	Weak transcription	Fetal Kidney	kidney
18	chr11:9174000-9198200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:9174000-9199400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:9174400-9191000	Weak transcription	Fetal Heart	heart
22	chr11:9175800-9193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:9178200-9195400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:9178600-9190000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:9178800-9192200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:9180000-9199600	Weak transcription	Aorta	Aorta
27	chr11:9180800-9191200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:9182200-9191800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:9182400-9190400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:9182400-9190800	Weak transcription	Fetal Intestine Large	intestine
31	chr11:9182400-9191200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:9182600-9188400	Weak transcription	K562	blood
35	chr11:9182600-9189200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:9182600-9189800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:9182600-9189800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:9182600-9190400	Weak transcription	HepG2	liver
39	chr11:9182600-9191000	Weak transcription	HMEC	breast
40	chr11:9182600-9191000	Weak transcription	NHLF	lung
41	chr11:9182600-9191200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:9182600-9191200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:9182600-9191200	Weak transcription	Lung	lung
44	chr11:9182600-9191800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:9182600-9198000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:9182600-9199000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:9182600-9199600	Weak transcription	Fetal Brain Male	brain
48	chr11:9183000-9191000	Weak transcription	NHEK	skin
49	chr11:9183000-9191200	Weak transcription	Fetal Lung	lung
50	chr11:9183000-9195400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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