Variant report

Variant	rs11042211
Chromosome Location	chr11:9209997-9209998
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047438	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1039210	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10769993	0.82[ASN][1000 genomes]
rs10769994	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769997	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769998	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840183	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840185	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042200	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042213	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12291375	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2133217	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6486199	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7109745	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7120239	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7394878	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7395151	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7396705	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7925308	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7930507	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:9197000-9210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
14	chr11:9200200-9210600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:9200200-9224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:9200400-9216600	Weak transcription	Fetal Brain Male	brain
17	chr11:9200400-9223600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:9200400-9224200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:9200600-9210400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:9200600-9210400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:9200600-9210400	Weak transcription	A549	lung
22	chr11:9200600-9210600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:9200600-9210600	Weak transcription	GM12878-XiMat	blood
24	chr11:9200600-9214400	Weak transcription	K562	blood
25	chr11:9200600-9224800	Weak transcription	Lung	lung
26	chr11:9200600-9224800	Weak transcription	Psoas Muscle	Psoas
27	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:9201000-9230800	Weak transcription	HMEC	breast
30	chr11:9202200-9210400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:9202400-9210400	Weak transcription	Fetal Intestine Small	intestine
32	chr11:9202400-9210400	Weak transcription	Fetal Thymus	thymus
33	chr11:9202400-9210600	Weak transcription	Ovary	ovary
34	chr11:9202400-9214400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:9202400-9224600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr11:9202400-9225000	Weak transcription	NHEK	skin
37	chr11:9202600-9210600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:9202600-9210600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:9202600-9210600	Weak transcription	Fetal Brain Female	brain
40	chr11:9202600-9210600	Weak transcription	Fetal Intestine Large	intestine
41	chr11:9202600-9224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:9202600-9225000	Weak transcription	Aorta	Aorta
43	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
44	chr11:9202800-9210400	Weak transcription	Liver	Liver
45	chr11:9202800-9212200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:9202800-9212200	Weak transcription	HSMMtube	muscle
47	chr11:9202800-9213400	Weak transcription	Hela-S3	cervix
48	chr11:9202800-9224200	Weak transcription	Pancreas	Pancrea
49	chr11:9202800-9224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:9203000-9210000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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