Variant report

Variant	rs11042200
Chromosome Location	chr11:9178992-9178993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10047438	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1039210	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10769992	0.88[CEU][hapmap]
rs10769993	0.88[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs10769994	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769995	0.89[CHB][hapmap];0.82[AFR][1000 genomes]
rs10769996	0.89[CHB][hapmap]
rs10769997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769998	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769999	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840175	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840176	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840183	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840185	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042189	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11042211	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12286943	0.85[ASN][1000 genomes]
rs12291375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16906742	0.85[ASN][1000 genomes]
rs17256375	0.86[CHB][hapmap]
rs1827011	0.83[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs1874822	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2133217	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2316087	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2316088	0.89[ASN][1000 genomes]
rs2647537	0.87[CEU][hapmap]
rs2742556	0.87[CEU][hapmap]
rs3898554	0.89[JPT][hapmap]
rs4910035	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5011703	0.80[AMR][1000 genomes]
rs6486199	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6486206	0.90[YRI][hapmap]
rs6486210	0.95[YRI][hapmap]
rs6486231	0.95[YRI][hapmap]
rs7109745	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7112540	0.95[YRI][hapmap]
rs7114688	0.95[YRI][hapmap]
rs7120239	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123970	0.86[CHB][hapmap];0.82[AFR][1000 genomes]
rs7128469	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7394878	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7395151	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7395846	0.91[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7396439	0.95[YRI][hapmap]
rs7396705	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7925308	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7930192	0.85[ASN][1000 genomes]
rs7930507	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931872	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7947251	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs883550	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
6	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
8	chr11:9161400-9179200	Strong transcription	Fetal Stomach	stomach
9	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
13	chr11:9167800-9187600	Strong transcription	Placenta	Placenta
14	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
15	chr11:9169400-9186400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
17	chr11:9169800-9179400	Strong transcription	Brain Cingulate Gyrus	brain
18	chr11:9171000-9182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:9171600-9181800	Weak transcription	Fetal Brain Male	brain
20	chr11:9171800-9180400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:9171800-9191400	Weak transcription	Psoas Muscle	Psoas
22	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:9172000-9181400	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:9172200-9199600	Weak transcription	Gastric	stomach
27	chr11:9172400-9182000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:9172600-9180400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:9173200-9179400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:9173200-9179800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:9173200-9180200	Strong transcription	HSMM	muscle
33	chr11:9173400-9182200	Weak transcription	Spleen	Spleen
34	chr11:9173400-9191000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:9173600-9180400	Weak transcription	HMEC	breast
37	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:9173800-9179000	Weak transcription	NH-A	brain
39	chr11:9173800-9179200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:9173800-9180200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:9173800-9181400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:9174000-9180400	Weak transcription	Fetal Intestine Large	intestine
43	chr11:9174000-9181200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:9174000-9181400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:9174000-9182000	Weak transcription	Right Ventricle	heart
48	chr11:9174000-9182200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:9174000-9182200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:9174000-9184000	Weak transcription	Fetal Thymus	thymus

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