Variant report

Variant	rs10840203
Chromosome Location	chr11:9329441-9329442
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9328481..9330937-chr11:9481410..9482943,2	MCF-7	breast:
2	chr11:9328690..9334073-chr11:9404480..9408917,7	K562	blood:
3	chr11:9328102..9338305-chr11:9404480..9412498,38	K562	blood:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10743102	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10743103	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10840197	0.83[AMR][1000 genomes]
rs11042254	0.83[AMR][1000 genomes]
rs4243946	0.83[AMR][1000 genomes]
rs4331093	0.83[AMR][1000 genomes]
rs4601780	0.83[AMR][1000 genomes]
rs4644643	0.83[AMR][1000 genomes]
rs7927382	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv515891	chr11:9275898-9334961	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv7669	chr11:9290376-9335028	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
9	esv1810183	chr11:9323886-9334961	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv553464	chr11:9323886-9334961	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9287400-9332600	Weak transcription	HMEC	breast
2	chr11:9287400-9333000	Weak transcription	Gastric	stomach
3	chr11:9287800-9333800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:9296600-9332600	Weak transcription	Right Ventricle	heart
5	chr11:9296600-9333000	Weak transcription	Psoas Muscle	Psoas
6	chr11:9296600-9334800	Weak transcription	Aorta	Aorta
7	chr11:9296800-9332800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:9296800-9333200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:9296800-9333200	Weak transcription	Ovary	ovary
10	chr11:9302600-9332600	Weak transcription	Esophagus	oesophagus
11	chr11:9302600-9333200	Weak transcription	Spleen	Spleen
12	chr11:9302600-9333400	Weak transcription	Fetal Brain Female	brain
13	chr11:9302600-9333600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:9302600-9334600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:9302600-9334800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:9302800-9334600	Weak transcription	NH-A	brain
17	chr11:9303200-9332000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:9303200-9333000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:9303400-9334000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:9305800-9332800	Weak transcription	NHDF-Ad	bronchial
21	chr11:9306000-9332600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:9308200-9332600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:9308200-9334800	Weak transcription	Primary B cells from cord blood	blood
24	chr11:9309400-9333800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:9312000-9331800	Weak transcription	HepG2	liver
26	chr11:9312600-9333200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:9312600-9334600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:9315000-9329800	Weak transcription	K562	blood
29	chr11:9316400-9332600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr11:9317000-9334800	Weak transcription	Placenta	Placenta
31	chr11:9318600-9329800	Weak transcription	HSMM	muscle
32	chr11:9318800-9332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:9318800-9333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:9319600-9330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:9319600-9332600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:9319600-9332600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:9319600-9333800	Weak transcription	NHLF	lung
38	chr11:9319800-9332600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:9319800-9333800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:9319800-9334800	Weak transcription	Fetal Intestine Large	intestine
41	chr11:9320200-9332600	Weak transcription	Thymus	Thymus
42	chr11:9320200-9333800	Weak transcription	Right Atrium	heart
43	chr11:9320400-9333000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:9320400-9333800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:9320600-9332600	Weak transcription	NHEK	skin
46	chr11:9320600-9333000	Weak transcription	Stomach Mucosa	stomach
47	chr11:9320600-9333800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:9320600-9334600	Weak transcription	HSMMtube	muscle
49	chr11:9320600-9334800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:9320800-9333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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