Variant report

Variant	rs10743103
Chromosome Location	chr11:9325374-9325375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9323308..9325382-chr11:9329913..9332100,2	K562	blood:
2	chr11:9324025..9326025-chr11:9386165..9388976,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10743100	1.00[EUR][1000 genomes]
rs10743102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840197	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840198	1.00[EUR][1000 genomes]
rs10840203	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11042254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12225143	1.00[EUR][1000 genomes]
rs1809855	1.00[EUR][1000 genomes]
rs1874821	1.00[EUR][1000 genomes]
rs2016375	1.00[EUR][1000 genomes]
rs4243946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4331093	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4372456	0.81[AFR][1000 genomes]
rs4414214	1.00[EUR][1000 genomes]
rs4420271	1.00[EUR][1000 genomes]
rs4450172	1.00[EUR][1000 genomes]
rs4589301	1.00[EUR][1000 genomes]
rs4601780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4625467	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4644643	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4910448	1.00[EUR][1000 genomes]
rs4993930	0.80[AFR][1000 genomes]
rs56306422	1.00[EUR][1000 genomes]
rs57052969	1.00[EUR][1000 genomes]
rs57655359	1.00[EUR][1000 genomes]
rs58309260	1.00[EUR][1000 genomes]
rs58361373	1.00[EUR][1000 genomes]
rs58795427	1.00[EUR][1000 genomes]
rs59398820	1.00[EUR][1000 genomes]
rs59400072	1.00[EUR][1000 genomes]
rs59618374	1.00[EUR][1000 genomes]
rs59984721	1.00[EUR][1000 genomes]
rs60542289	1.00[EUR][1000 genomes]
rs60602151	1.00[EUR][1000 genomes]
rs60731772	1.00[EUR][1000 genomes]
rs61217844	1.00[EUR][1000 genomes]
rs61379640	1.00[EUR][1000 genomes]
rs61409427	1.00[EUR][1000 genomes]
rs6486149	1.00[EUR][1000 genomes]
rs7119158	1.00[EUR][1000 genomes]
rs73402319	1.00[EUR][1000 genomes]
rs73402323	1.00[EUR][1000 genomes]
rs73402339	1.00[EUR][1000 genomes]
rs73402344	1.00[EUR][1000 genomes]
rs73402346	1.00[EUR][1000 genomes]
rs73402362	1.00[EUR][1000 genomes]
rs73402399	1.00[EUR][1000 genomes]
rs73404303	1.00[EUR][1000 genomes]
rs73404305	1.00[EUR][1000 genomes]
rs73412019	1.00[EUR][1000 genomes]
rs73412032	1.00[EUR][1000 genomes]
rs73416044	1.00[EUR][1000 genomes]
rs73416046	1.00[EUR][1000 genomes]
rs73416057	1.00[EUR][1000 genomes]
rs7927382	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931491	1.00[EUR][1000 genomes]
rs7932136	1.00[EUR][1000 genomes]
rs7932954	1.00[EUR][1000 genomes]
rs7935518	1.00[EUR][1000 genomes]
rs7942119	1.00[EUR][1000 genomes]
rs7944130	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7944713	1.00[EUR][1000 genomes]
rs7948651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv515891	chr11:9275898-9334961	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv7669	chr11:9290376-9335028	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv32901	chr11:9311131-9328869	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
10	esv1001197	chr11:9316963-9326487	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3453597	chr11:9321876-9326574	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3357466	chr11:9322376-9326174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3453653	chr11:9322801-9325949	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3425197	chr11:9322826-9325624	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3453664	chr11:9323151-9325383	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2567694	chr11:9323235-9325585	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3479219	chr11:9323275-9325822	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3479230	chr11:9323275-9325822	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv553463	chr11:9323886-9328743	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	esv1810183	chr11:9323886-9334961	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
21	nsv553464	chr11:9323886-9334961	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9287400-9332600	Weak transcription	HMEC	breast
2	chr11:9287400-9333000	Weak transcription	Gastric	stomach
3	chr11:9287800-9328400	Weak transcription	A549	lung
4	chr11:9287800-9333800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:9296600-9332600	Weak transcription	Right Ventricle	heart
6	chr11:9296600-9333000	Weak transcription	Psoas Muscle	Psoas
7	chr11:9296600-9334800	Weak transcription	Aorta	Aorta
8	chr11:9296800-9332800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:9296800-9333200	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:9296800-9333200	Weak transcription	Ovary	ovary
11	chr11:9302600-9332600	Weak transcription	Esophagus	oesophagus
12	chr11:9302600-9333200	Weak transcription	Spleen	Spleen
13	chr11:9302600-9333400	Weak transcription	Fetal Brain Female	brain
14	chr11:9302600-9333600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:9302600-9334600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:9302600-9334800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:9302800-9334600	Weak transcription	NH-A	brain
18	chr11:9303200-9332000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:9303200-9333000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:9303400-9334000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:9305800-9332800	Weak transcription	NHDF-Ad	bronchial
22	chr11:9306000-9332600	Weak transcription	Brain Germinal Matrix	brain
23	chr11:9308200-9329200	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:9308200-9332600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:9308200-9334800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:9309400-9333800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:9310000-9328400	Weak transcription	Fetal Heart	heart
28	chr11:9312000-9331800	Weak transcription	HepG2	liver
29	chr11:9312600-9333200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:9312600-9334600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:9315000-9329800	Weak transcription	K562	blood
32	chr11:9316400-9332600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr11:9317000-9334800	Weak transcription	Placenta	Placenta
34	chr11:9318600-9329800	Weak transcription	HSMM	muscle
35	chr11:9318800-9332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:9318800-9333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:9319600-9330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:9319600-9332600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:9319600-9332600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:9319600-9333800	Weak transcription	NHLF	lung
41	chr11:9319800-9332600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:9319800-9333800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:9319800-9334800	Weak transcription	Fetal Intestine Large	intestine
44	chr11:9320200-9332600	Weak transcription	Thymus	Thymus
45	chr11:9320200-9333800	Weak transcription	Right Atrium	heart
46	chr11:9320400-9326800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:9320400-9333000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:9320400-9333800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:9320600-9327200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:9320600-9332600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links