Variant report

Variant	rs73402319
Chromosome Location	chr11:9179206-9179207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10743100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10743102	1.00[EUR][1000 genomes]
rs10743103	1.00[EUR][1000 genomes]
rs10840197	1.00[EUR][1000 genomes]
rs10840198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042254	1.00[EUR][1000 genomes]
rs12225143	1.00[EUR][1000 genomes]
rs1809855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2016375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4243946	1.00[EUR][1000 genomes]
rs4331093	1.00[EUR][1000 genomes]
rs4372456	1.00[AMR][1000 genomes]
rs4420271	1.00[EUR][1000 genomes]
rs4450172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4589301	1.00[EUR][1000 genomes]
rs4601780	1.00[EUR][1000 genomes]
rs4625467	1.00[EUR][1000 genomes]
rs4644643	1.00[EUR][1000 genomes]
rs4910448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56306422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57052969	1.00[EUR][1000 genomes]
rs57655359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58309260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58361373	1.00[EUR][1000 genomes]
rs58795427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59398820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59400072	1.00[EUR][1000 genomes]
rs59618374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59984721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60542289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60602151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60731772	1.00[EUR][1000 genomes]
rs60960132	1.00[EUR][1000 genomes]
rs61217844	1.00[EUR][1000 genomes]
rs61379640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61409427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486149	1.00[EUR][1000 genomes]
rs7119158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119887	1.00[EUR][1000 genomes]
rs73402323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402344	1.00[EUR][1000 genomes]
rs73402346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412019	1.00[EUR][1000 genomes]
rs73412032	1.00[EUR][1000 genomes]
rs73412059	1.00[AMR][1000 genomes]
rs73416044	1.00[EUR][1000 genomes]
rs73416046	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73416057	1.00[EUR][1000 genomes]
rs7931491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935573	1.00[AMR][1000 genomes]
rs7942119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
6	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
8	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
12	chr11:9167800-9187600	Strong transcription	Placenta	Placenta
13	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
14	chr11:9169400-9186400	Weak transcription	Fetal Intestine Small	intestine
15	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
16	chr11:9169800-9179400	Strong transcription	Brain Cingulate Gyrus	brain
17	chr11:9171000-9182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:9171600-9181800	Weak transcription	Fetal Brain Male	brain
19	chr11:9171800-9180400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:9171800-9191400	Weak transcription	Psoas Muscle	Psoas
21	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:9172000-9181400	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:9172200-9199600	Weak transcription	Gastric	stomach
26	chr11:9172400-9182000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:9172600-9180400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:9173200-9179400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:9173200-9179800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:9173200-9180200	Strong transcription	HSMM	muscle
32	chr11:9173400-9182200	Weak transcription	Spleen	Spleen
33	chr11:9173400-9191000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:9173600-9180400	Weak transcription	HMEC	breast
36	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:9173800-9180200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:9173800-9181400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr11:9174000-9180400	Weak transcription	Fetal Intestine Large	intestine
40	chr11:9174000-9181200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:9174000-9181400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:9174000-9182000	Weak transcription	Right Ventricle	heart
45	chr11:9174000-9182200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:9174000-9182200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:9174000-9184000	Weak transcription	Fetal Thymus	thymus
48	chr11:9174000-9184600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:9174000-9184600	Weak transcription	Brain Substantia Nigra	brain
50	chr11:9174000-9194800	Weak transcription	Fetal Kidney	kidney

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