Variant report

Variant	rs58361373
Chromosome Location	chr11:9164666-9164667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9163547..9165539-chr11:9168849..9171876,3	K562	blood:

Variant related genes	Relation type
ENSG00000184014	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10743100	1.00[EUR][1000 genomes]
rs10743102	1.00[EUR][1000 genomes]
rs10743103	1.00[EUR][1000 genomes]
rs10840197	1.00[EUR][1000 genomes]
rs10840198	1.00[EUR][1000 genomes]
rs11042254	1.00[EUR][1000 genomes]
rs12225143	1.00[EUR][1000 genomes]
rs1809855	1.00[EUR][1000 genomes]
rs1874821	1.00[EUR][1000 genomes]
rs2016375	1.00[EUR][1000 genomes]
rs4243946	1.00[EUR][1000 genomes]
rs4331093	1.00[EUR][1000 genomes]
rs4420271	1.00[EUR][1000 genomes]
rs4450172	1.00[EUR][1000 genomes]
rs4589301	1.00[EUR][1000 genomes]
rs4601780	1.00[EUR][1000 genomes]
rs4625467	1.00[EUR][1000 genomes]
rs4644643	1.00[EUR][1000 genomes]
rs4910448	1.00[EUR][1000 genomes]
rs56306422	1.00[EUR][1000 genomes]
rs57052969	1.00[EUR][1000 genomes]
rs57655359	1.00[EUR][1000 genomes]
rs58309260	1.00[EUR][1000 genomes]
rs58795427	1.00[EUR][1000 genomes]
rs59398820	1.00[EUR][1000 genomes]
rs59400072	1.00[EUR][1000 genomes]
rs59618374	1.00[EUR][1000 genomes]
rs59984721	1.00[EUR][1000 genomes]
rs60542289	1.00[EUR][1000 genomes]
rs60602151	1.00[EUR][1000 genomes]
rs60731772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60960132	1.00[EUR][1000 genomes]
rs61217844	1.00[EUR][1000 genomes]
rs61379640	1.00[EUR][1000 genomes]
rs61409427	1.00[EUR][1000 genomes]
rs6486149	1.00[EUR][1000 genomes]
rs7119158	1.00[EUR][1000 genomes]
rs7119887	1.00[EUR][1000 genomes]
rs73402319	1.00[EUR][1000 genomes]
rs73402323	1.00[EUR][1000 genomes]
rs73402339	1.00[EUR][1000 genomes]
rs73402344	1.00[EUR][1000 genomes]
rs73402346	1.00[EUR][1000 genomes]
rs73402362	1.00[EUR][1000 genomes]
rs73402399	1.00[EUR][1000 genomes]
rs73404303	1.00[EUR][1000 genomes]
rs73404305	1.00[EUR][1000 genomes]
rs73412019	1.00[EUR][1000 genomes]
rs73412032	1.00[EUR][1000 genomes]
rs73416044	1.00[EUR][1000 genomes]
rs73416046	1.00[EUR][1000 genomes]
rs73416056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7931491	1.00[EUR][1000 genomes]
rs7932136	1.00[EUR][1000 genomes]
rs7932954	1.00[EUR][1000 genomes]
rs7935518	1.00[EUR][1000 genomes]
rs7942119	1.00[EUR][1000 genomes]
rs7944130	1.00[EUR][1000 genomes]
rs7944713	1.00[EUR][1000 genomes]
rs7948651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9142600-9175000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9151800-9175800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr11:9152800-9175800	Strong transcription	Fetal Muscle Leg	muscle
4	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9156800-9167200	Strong transcription	Placenta	Placenta
7	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9158600-9165600	Strong transcription	Primary hematopoietic stem cells	blood
10	chr11:9158800-9165000	Strong transcription	Fetal Brain Female	brain
11	chr11:9158800-9166400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:9158800-9166600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:9159000-9168000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:9159000-9169400	Strong transcription	Fetal Intestine Small	intestine
15	chr11:9159000-9170200	Genic enhancers	Brain Hippocampus Middle	brain
16	chr11:9159000-9175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:9159400-9170200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:9159400-9174400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
20	chr11:9159800-9165000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:9159800-9169200	Strong transcription	Right Ventricle	heart
22	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:9160000-9174000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:9160000-9177200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:9160200-9166200	Strong transcription	Fetal Thymus	thymus
26	chr11:9160200-9168000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:9160200-9174600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:9160200-9174800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:9160200-9175600	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:9160400-9167800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:9160400-9171400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:9160400-9174200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:9160400-9175600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:9160600-9172000	Strong transcription	Colon Smooth Muscle	Colon
35	chr11:9160600-9174000	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr11:9160600-9174200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:9160600-9174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:9160600-9175400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:9160800-9166200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:9160800-9167000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:9160800-9174000	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr11:9161000-9174000	Strong transcription	Primary B cells from cord blood	blood
43	chr11:9161200-9166800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:9161200-9172200	Strong transcription	Rectal Smooth Muscle	rectum
45	chr11:9161200-9172400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:9161200-9174000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:9161200-9174200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:9161200-9175400	Strong transcription	Fetal Lung	lung
49	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
50	chr11:9161400-9171600	Strong transcription	HSMM	muscle

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