Variant report

Variant	rs4625467
Chromosome Location	chr11:9341507-9341508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9335954..9337898-chr11:9338868..9341864,2	MCF-7	breast:
2	chr11:9340099..9341821-chr11:9406076..9407698,2	K562	blood:
3	chr11:9341168..9342837-chr11:9350821..9353543,2	K562	blood:
4	chr11:9339910..9342250-chr11:9383907..9387311,3	K562	blood:
5	chr11:9340099..9343454-chr11:9406076..9407743,3	K562	blood:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction
ENSG00000166471	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10743100	1.00[EUR][1000 genomes]
rs10743102	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10743103	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840197	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840198	1.00[EUR][1000 genomes]
rs11042254	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12225143	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1809855	1.00[EUR][1000 genomes]
rs1874821	1.00[EUR][1000 genomes]
rs2016375	1.00[EUR][1000 genomes]
rs4243946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4331093	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414214	1.00[EUR][1000 genomes]
rs4420271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4450172	1.00[EUR][1000 genomes]
rs4589301	1.00[EUR][1000 genomes]
rs4601780	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4644643	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4910448	1.00[EUR][1000 genomes]
rs56306422	1.00[EUR][1000 genomes]
rs57052969	1.00[EUR][1000 genomes]
rs57655359	1.00[EUR][1000 genomes]
rs58309260	1.00[EUR][1000 genomes]
rs58361373	1.00[EUR][1000 genomes]
rs58795427	1.00[EUR][1000 genomes]
rs59398820	1.00[EUR][1000 genomes]
rs59400072	1.00[EUR][1000 genomes]
rs59618374	1.00[EUR][1000 genomes]
rs59984721	1.00[EUR][1000 genomes]
rs60542289	1.00[EUR][1000 genomes]
rs60602151	1.00[EUR][1000 genomes]
rs60731772	1.00[EUR][1000 genomes]
rs61217844	1.00[EUR][1000 genomes]
rs61379640	1.00[EUR][1000 genomes]
rs61409427	1.00[EUR][1000 genomes]
rs6486149	1.00[EUR][1000 genomes]
rs7119158	1.00[EUR][1000 genomes]
rs73402319	1.00[EUR][1000 genomes]
rs73402323	1.00[EUR][1000 genomes]
rs73402339	1.00[EUR][1000 genomes]
rs73402344	1.00[EUR][1000 genomes]
rs73402346	1.00[EUR][1000 genomes]
rs73402362	1.00[EUR][1000 genomes]
rs73402399	1.00[EUR][1000 genomes]
rs73404303	1.00[EUR][1000 genomes]
rs73404305	1.00[EUR][1000 genomes]
rs73412032	1.00[EUR][1000 genomes]
rs73416044	1.00[EUR][1000 genomes]
rs73416046	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416057	1.00[EUR][1000 genomes]
rs7927382	0.83[AMR][1000 genomes]
rs7931491	1.00[EUR][1000 genomes]
rs7932136	1.00[EUR][1000 genomes]
rs7932954	1.00[EUR][1000 genomes]
rs7935518	1.00[EUR][1000 genomes]
rs7942119	1.00[EUR][1000 genomes]
rs7944130	1.00[EUR][1000 genomes]
rs7944713	1.00[EUR][1000 genomes]
rs7948651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
7	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9337000-9350600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:9337200-9350400	Weak transcription	HSMMtube	muscle
3	chr11:9337400-9342800	Enhancers	K562	blood
4	chr11:9339400-9341800	Enhancers	Stomach Mucosa	stomach
5	chr11:9339800-9341600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:9339800-9341800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:9339800-9341800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:9339800-9342000	Enhancers	HepG2	liver
9	chr11:9340000-9342000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:9340000-9342000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:9340200-9341800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:9340600-9341600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:9340800-9341800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:9341000-9341600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:9341000-9341600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:9341000-9341600	Enhancers	Fetal Intestine Small	intestine
17	chr11:9341000-9341800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:9341000-9342000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:9341000-9342000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:9341000-9342000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:9341200-9341600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:9341200-9341600	Flanking Active TSS	A549	lung
23	chr11:9341200-9342000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:9341200-9342000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:9341200-9342000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:9341400-9341600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:9341400-9341600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr11:9341400-9341600	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:9341400-9341600	Bivalent Enhancer	Fetal Lung	lung
30	chr11:9341400-9341600	Enhancers	Lung	lung

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