Variant report

Variant	rs73416056
Chromosome Location	chr11:9169604-9169605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9108929..9110845-chr11:9168410..9170250,2	MCF-7	breast:
2	chr11:9166569..9169771-chr11:9171907..9174978,4	K562	blood:
3	chr11:9169410..9173680-chr11:9196051..9200398,3	MCF-7	breast:
4	chr11:9164117..9168373-chr11:9169082..9171685,4	K562	blood:
5	chr11:9163547..9165539-chr11:9168849..9171876,3	K562	blood:

Variant related genes	Relation type
ENSG00000184014	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58361373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9142600-9175000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9151800-9175800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr11:9152800-9175800	Strong transcription	Fetal Muscle Leg	muscle
4	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:9159000-9170200	Genic enhancers	Brain Hippocampus Middle	brain
9	chr11:9159000-9175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:9159400-9170200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:9159400-9174400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
13	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:9160000-9174000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:9160000-9177200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:9160200-9174600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:9160200-9174800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:9160200-9175600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:9160400-9171400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:9160400-9174200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:9160400-9175600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:9160600-9172000	Strong transcription	Colon Smooth Muscle	Colon
23	chr11:9160600-9174000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr11:9160600-9174200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:9160600-9174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:9160600-9175400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:9160800-9174000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr11:9161000-9174000	Strong transcription	Primary B cells from cord blood	blood
29	chr11:9161200-9172200	Strong transcription	Rectal Smooth Muscle	rectum
30	chr11:9161200-9172400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:9161200-9174000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:9161200-9174200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:9161200-9175400	Strong transcription	Fetal Lung	lung
34	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
35	chr11:9161400-9171600	Strong transcription	HSMM	muscle
36	chr11:9161400-9172000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:9161400-9173000	Weak transcription	Stomach Mucosa	stomach
38	chr11:9161400-9174200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:9161400-9175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:9161400-9179200	Strong transcription	Fetal Stomach	stomach
41	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:9161600-9171600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:9161600-9172200	Strong transcription	HSMMtube	muscle
44	chr11:9161600-9174000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:9161800-9171200	Strong transcription	NHDF-Ad	bronchial
46	chr11:9161800-9171800	Strong transcription	NH-A	brain
47	chr11:9161800-9172200	Weak transcription	Right Atrium	heart
48	chr11:9161800-9174000	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:9162000-9171600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:9162000-9175800	Strong transcription	Adipose Nuclei	Adipose

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