Variant report

Variant	rs10840261
Chromosome Location	chr11:9584899-9584900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9551354..9552960-chr11:9583061..9585366,2	MCF-7	breast:
2	chr11:9577852..9580847-chr11:9583001..9585793,2	K562	blood:
3	chr11:9568845..9571687-chr11:9584887..9588647,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10770040	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10840260	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042422	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1988828	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2313087	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910479	0.89[EUR][1000 genomes]
rs7108372	0.96[EUR][1000 genomes]
rs7109773	0.90[EUR][1000 genomes]
rs7115385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7480266	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7929469	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971928	chr11:9561378-9586236	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3468619	chr11:9584484-9586097	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3468630	chr11:9584484-9586097	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:9566400-9587400	Weak transcription	Psoas Muscle	Psoas
4	chr11:9573800-9585000	Weak transcription	Lung	lung
5	chr11:9573800-9586000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:9573800-9586600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:9573800-9586600	Weak transcription	Pancreas	Pancrea
8	chr11:9573800-9587800	Weak transcription	Gastric	stomach
9	chr11:9579000-9590200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:9582800-9586600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:9583000-9590200	Weak transcription	Primary T cells from cord blood	blood
12	chr11:9583200-9586400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:9583600-9585200	Enhancers	NHEK	skin
14	chr11:9583800-9585200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:9583800-9585200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:9583800-9585200	Enhancers	HMEC	breast
17	chr11:9584000-9586600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:9584200-9594400	Enhancers	Stomach Mucosa	stomach
19	chr11:9584200-9594400	Weak transcription	Spleen	Spleen
20	chr11:9584400-9585200	Enhancers	Esophagus	oesophagus
21	chr11:9584400-9585200	Enhancers	Fetal Heart	heart
22	chr11:9584600-9585000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:9584600-9585000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:9584800-9585200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:9584800-9585200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:9584800-9585200	Enhancers	Fetal Muscle Trunk	muscle
27	chr11:9584800-9585200	Enhancers	Fetal Muscle Leg	muscle
28	chr11:9584800-9585200	Enhancers	Left Ventricle	heart
29	chr11:9584800-9585200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:9584800-9585200	Enhancers	HSMM	muscle
31	chr11:9584800-9586600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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