Variant report

Variant	rs10841889
Chromosome Location	chr12:21871510-21871511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21870829..21872375-chr12:21872892..21875867,2	K562	blood:
2	chr12:21861711..21863736-chr12:21869922..21872687,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10770848	0.90[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10770851	0.82[ASN][1000 genomes]
rs10841872	1.00[CHB][hapmap]
rs10841878	0.82[ASN][1000 genomes]
rs10841880	0.82[ASN][1000 genomes]
rs10841886	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841888	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841891	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10841893	0.86[CEU][hapmap]
rs11046157	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11046159	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11046160	0.89[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11046164	0.82[ASN][1000 genomes]
rs11046166	0.86[ASN][1000 genomes]
rs11046171	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046174	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426310	0.81[ASN][1000 genomes]
rs12426826	0.81[ASN][1000 genomes]
rs12816929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821277	0.85[CEU][hapmap]
rs12824788	1.00[CHB][hapmap]
rs1293188	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153941	0.91[CHB][hapmap]
rs1586844	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650307	0.90[CHB][hapmap]
rs1677091	0.81[CHB][hapmap]
rs2077105	0.82[ASN][1000 genomes]
rs34015001	0.81[ASN][1000 genomes]
rs34084105	0.82[ASN][1000 genomes]
rs60486179	0.81[AFR][1000 genomes]
rs66592830	0.81[ASN][1000 genomes]
rs7133519	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7135965	1.00[CHB][hapmap]
rs7301883	0.90[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7305475	0.90[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs731304	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7316669	0.90[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs73249234	0.81[AFR][1000 genomes]
rs73249265	0.81[AFR][1000 genomes]
rs73249266	0.81[AFR][1000 genomes]
rs73249276	0.81[AFR][1000 genomes]
rs74067628	0.81[AFR][1000 genomes]
rs7953579	0.91[CHB][hapmap]
rs852815	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852816	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv832349	chr12:21749093-21930695	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10841889	RP11-59N23.3	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21865000-21872400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr12:21869600-21873200	Enhancers	Fetal Kidney	kidney
3	chr12:21870200-21872400	Enhancers	HUVEC	blood vessel
4	chr12:21870600-21871800	Enhancers	Fetal Lung	lung
5	chr12:21870600-21872200	Enhancers	Fetal Stomach	stomach
6	chr12:21871200-21872000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:21871200-21872200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr12:21871400-21872600	Enhancers	Rectal Smooth Muscle	rectum
9	chr12:21871400-21872800	Enhancers	Colon Smooth Muscle	Colon

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