Variant report

Variant	rs12821277
Chromosome Location	chr12:112595463-112595464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:112589683..112592158-chr12:112594454..112596986,2	MCF-7	breast:
2	chr12:112594315..112597907-chr12:112599950..112602262,3	K562	blood:

Variant related genes	Relation type
ENSG00000173064	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10770860	0.97[ASN][1000 genomes]
rs10841893	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10841894	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11046182	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11046186	0.89[ASN][1000 genomes]
rs11046188	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11046191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283791	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1283810	0.93[CHB][hapmap]
rs1283811	0.93[CHB][hapmap]
rs1586844	0.81[AFR][1000 genomes]
rs1873638	0.93[CHB][hapmap]
rs2638441	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2726120	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4148679	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7309274	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs829060	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs829061	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs829064	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829074	0.93[CHB][hapmap]
rs9668454	0.88[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428368	chr12:112561353-112879845	Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:112588200-112672400	Weak transcription	Psoas Muscle	Psoas
2	chr12:112588400-112596400	Weak transcription	Fetal Brain Male	brain
3	chr12:112588600-112596000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:112588800-112612800	Weak transcription	HMEC	breast
5	chr12:112590400-112595800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:112590400-112596000	Weak transcription	Fetal Kidney	kidney
7	chr12:112590400-112597200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:112590600-112596000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:112590600-112597400	Weak transcription	K562	blood
10	chr12:112590800-112653800	Weak transcription	Stomach Mucosa	stomach
11	chr12:112591000-112596400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:112591000-112597800	Weak transcription	NH-A	brain
13	chr12:112591200-112596000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:112591200-112596000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr12:112591200-112596200	Weak transcription	Aorta	Aorta
16	chr12:112591200-112597400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:112591200-112612800	Weak transcription	HepG2	liver
18	chr12:112591400-112597400	Weak transcription	NHDF-Ad	bronchial
19	chr12:112591800-112608800	Weak transcription	HUVEC	blood vessel
20	chr12:112592000-112595800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:112592000-112595800	Weak transcription	Ovary	ovary
22	chr12:112592000-112596000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:112592000-112596200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr12:112592000-112599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:112592200-112595600	Weak transcription	Adipose Nuclei	Adipose
26	chr12:112592200-112595800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:112592200-112595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:112592200-112595800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:112592200-112595800	Weak transcription	Fetal Lung	lung
30	chr12:112592200-112595800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr12:112592200-112596000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:112592200-112596000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr12:112592200-112596000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:112592200-112596000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:112592200-112596000	Weak transcription	Brain Anterior Caudate	brain
36	chr12:112592200-112596000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:112592200-112596000	Weak transcription	Fetal Brain Female	brain
38	chr12:112592200-112596000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr12:112592200-112596000	Weak transcription	Fetal Thymus	thymus
40	chr12:112592200-112596000	Weak transcription	Left Ventricle	heart
41	chr12:112592200-112596000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:112592200-112596200	Weak transcription	Gastric	stomach
43	chr12:112592200-112596200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr12:112592200-112596200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr12:112592200-112596200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr12:112592200-112596400	Weak transcription	Brain Angular Gyrus	brain
47	chr12:112592200-112596400	Weak transcription	Colonic Mucosa	Colon
48	chr12:112592200-112596400	Weak transcription	HSMMtube	muscle
49	chr12:112592200-112596600	Weak transcription	Dnd41	blood
50	chr12:112592200-112597000	Weak transcription	Muscle Satellite Cultured Cells	--

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