Variant report

Variant	rs10841894
Chromosome Location	chr12:21932419-21932420
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10770860	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10841891	0.82[ASN][1000 genomes]
rs10841893	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11046182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11046186	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11046188	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11046191	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12821277	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1283791	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2638441	0.83[ASN][1000 genomes]
rs4148679	0.84[ASN][1000 genomes]
rs7309274	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs731304	0.82[ASN][1000 genomes]
rs829060	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs829061	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs829064	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9668454	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21928800-21932800	Enhancers	Fetal Lung	lung
2	chr12:21929600-21932600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:21929600-21941800	Weak transcription	Pancreas	Pancrea
4	chr12:21930600-21933200	Weak transcription	Fetal Heart	heart
5	chr12:21931600-21934200	Enhancers	Colon Smooth Muscle	Colon
6	chr12:21932000-21932600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr12:21932000-21935600	Weak transcription	Liver	Liver
8	chr12:21932200-21933400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:21932200-21934200	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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