Variant report

Variant	rs10842665
Chromosome Location	chr12:9139887-9139888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-M6PR-1	chr12:9139771-9140077	ENSG00000257105.1

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11048353	0.88[ASN][1000 genomes]
rs11048369	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11494758	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11834163	0.82[JPT][hapmap]
rs12426857	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805720	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1805726	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1805728	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1805730	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs4140911	0.80[EUR][1000 genomes]
rs55939602	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7296295	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2754892	chr12:9136351-9179007	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9133600-9140600	Weak transcription	Spleen	Spleen
2	chr12:9133800-9164600	Weak transcription	Psoas Muscle	Psoas
3	chr12:9133800-9170200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:9135800-9141800	Weak transcription	Primary B cells from cord blood	blood
5	chr12:9137600-9142000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr12:9137800-9141800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr12:9137800-9141800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:9137800-9142200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:9138000-9140200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:9138000-9142200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr12:9138000-9143000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:9138400-9140200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:9138400-9140200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr12:9138400-9142200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr12:9138600-9142200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:9139000-9142200	Enhancers	Primary T cells from cord blood	blood
17	chr12:9139200-9140000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:9139200-9142200	Enhancers	Primary hematopoietic stem cells	blood
19	chr12:9139200-9142200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:9139200-9144400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr12:9139600-9140000	Enhancers	Duodenum Mucosa	Duodenum
22	chr12:9139600-9144600	Weak transcription	Fetal Thymus	thymus
23	chr12:9139800-9140000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr12:9139800-9140600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr12:9139800-9140800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr12:9139800-9141000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr12:9139800-9142200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:9139800-9142200	Enhancers	Adipose Nuclei	Adipose
29	chr12:9139800-9142200	Enhancers	HUVEC	blood vessel
30	chr12:9139800-9143200	Enhancers	GM12878-XiMat	blood

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