Variant report

Variant	rs11834163
Chromosome Location	chr12:9121965-9121966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr12:9121898-9122098	PANC-1	pancreas:	n/a	n/a
2	CTCF	chr12:9121840-9121990	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9099223..9102026-chr12:9119654..9122322,2	MCF-7	breast:

Variant related genes	Relation type
KLRG1	TF binding region
ENSG00000003056	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10492114	0.82[JPT][hapmap]
rs10842598	1.00[JPT][hapmap]
rs10842665	0.82[JPT][hapmap]
rs11048208	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048241	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048353	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11494758	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11609582	0.82[JPT][hapmap]
rs11611433	0.82[JPT][hapmap]
rs11613746	0.82[JPT][hapmap]
rs11615143	0.82[JPT][hapmap]
rs12371962	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426857	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16917971	0.82[JPT][hapmap]
rs1805720	0.82[JPT][hapmap]
rs1805726	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1805728	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1805729	1.00[CHB][hapmap]
rs1805730	0.84[EUR][1000 genomes]
rs1805731	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs1805734	1.00[CHB][hapmap]
rs1805738	1.00[CHB][hapmap]
rs1805776	1.00[CHB][hapmap]
rs1863838	0.82[JPT][hapmap]
rs226406	0.82[JPT][hapmap]
rs3026261	1.00[CHB][hapmap]
rs3213832	0.82[JPT][hapmap]
rs3741850	0.82[JPT][hapmap]
rs3741852	0.82[JPT][hapmap]
rs4140911	0.85[EUR][1000 genomes]
rs4883213	0.82[JPT][hapmap]
rs55939602	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6487636	0.82[JPT][hapmap]
rs7296295	0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7298673	0.82[JPT][hapmap]
rs7970135	0.82[JPT][hapmap]
rs887783	1.00[CHB][hapmap]
rs9888309	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9121400-9122000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:9121400-9132600	Weak transcription	Psoas Muscle	Psoas
3	chr12:9121600-9122000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
4	chr12:9121600-9122600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:9121800-9122000	ZNF genes & repeats	Esophagus	oesophagus

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