Variant report

Variant	rs1805738
Chromosome Location	chr12:9077330-9077331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11047939	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11048034	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11048036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11048037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11048060	0.90[CEU][hapmap];0.91[GIH][hapmap]
rs11048063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834163	1.00[CHB][hapmap]
rs1805726	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1805728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1805729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1805731	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1805734	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1805739	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1805740	0.90[CEU][hapmap];0.91[GIH][hapmap]
rs1805741	0.86[CEU][hapmap]
rs1805776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3026261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4883198	0.90[CEU][hapmap]
rs55710456	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887783	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1805738	M6PR	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9068200-9079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:9068200-9084000	Weak transcription	Esophagus	oesophagus
3	chr12:9068200-9086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:9068200-9088800	Weak transcription	Gastric	stomach
5	chr12:9068200-9091400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:9068200-9094200	Weak transcription	Colonic Mucosa	Colon
7	chr12:9068200-9094200	Weak transcription	Lung	lung
8	chr12:9068200-9094200	Weak transcription	Psoas Muscle	Psoas
9	chr12:9068200-9094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr12:9068200-9094200	Weak transcription	Small Intestine	intestine
11	chr12:9068200-9100000	Weak transcription	Stomach Mucosa	stomach
12	chr12:9068600-9081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:9068800-9081200	Weak transcription	NHDF-Ad	bronchial
14	chr12:9068800-9081600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr12:9068800-9084400	Weak transcription	Osteobl	bone
16	chr12:9068800-9086400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr12:9069000-9079600	Weak transcription	Fetal Brain Male	brain
18	chr12:9069000-9086400	Weak transcription	HepG2	liver
19	chr12:9069000-9094200	Weak transcription	NHLF	lung
20	chr12:9069400-9094000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:9069400-9094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr12:9069600-9084400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:9069600-9092000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:9069800-9082400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:9069800-9083600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr12:9069800-9083800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr12:9070400-9078000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:9070400-9078800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:9070400-9079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:9070400-9079600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr12:9070400-9083400	Weak transcription	K562	blood
32	chr12:9070400-9092000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:9070400-9092000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr12:9070600-9078200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:9070600-9078200	Strong transcription	Fetal Thymus	thymus
36	chr12:9070600-9092000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr12:9070600-9092600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr12:9070600-9092600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr12:9071000-9077800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:9071000-9078200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr12:9071000-9078600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr12:9071000-9079000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr12:9071000-9087800	Strong transcription	Fetal Brain Female	brain
44	chr12:9071000-9092000	Strong transcription	Fetal Muscle Leg	muscle
45	chr12:9071200-9077800	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr12:9071200-9078200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr12:9071200-9078600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr12:9071200-9080400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr12:9071200-9088000	Strong transcription	Primary T cells from cord blood	blood
50	chr12:9071400-9078000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links