Variant report

Variant	rs10842679
Chromosome Location	chr12:26281858-26281859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10431216	0.83[EUR][1000 genomes]
rs10771262	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10842680	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1383112	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1383113	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1383116	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2729628	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3809140	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61915716	0.81[EUR][1000 genomes]
rs6487532	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898932	chr12:26262137-26283482	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv898933	chr12:26262137-26285006	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26280000-26282800	Enhancers	NHDF-Ad	bronchial
2	chr12:26280000-26287800	Weak transcription	Aorta	Aorta
3	chr12:26280400-26286800	Weak transcription	Brain Substantia Nigra	brain
4	chr12:26280600-26287800	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:26280600-26290200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:26281200-26282800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr12:26281200-26286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:26281600-26286600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:26281600-26286600	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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