Variant report

Variant	rs1383112
Chromosome Location	chr12:26287230-26287231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10431216	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs10771262	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10842679	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10842680	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1383113	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1383116	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2729628	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3809140	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61915716	0.81[EUR][1000 genomes]
rs6487532	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26280000-26287800	Weak transcription	Aorta	Aorta
2	chr12:26280600-26287800	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:26280600-26290200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:26284000-26287800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:26284200-26288200	Weak transcription	Spleen	Spleen
6	chr12:26286600-26288800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:26286600-26288800	Enhancers	HMEC	breast
8	chr12:26286800-26287400	Enhancers	Brain Substantia Nigra	brain
9	chr12:26286800-26287800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr12:26286800-26288000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:26287000-26290400	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:26287200-26287600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:26287200-26287800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr12:26287200-26288000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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