Variant report

Variant	rs10843355
Chromosome Location	chr12:29394618-29394619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10843354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10843356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10843364	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10843374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10843379	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10843380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10843381	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10843386	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10843389	1.00[JPT][hapmap]
rs10843392	1.00[AMR][1000 genomes]
rs10843394	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11050178	0.86[ASN][1000 genomes]
rs11050179	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11050180	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11050204	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12228116	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12229024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12299290	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12303490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12304963	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12306862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12308135	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12310050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12311282	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16934213	1.00[JPT][hapmap]
rs1836861	1.00[YRI][hapmap]
rs28825120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7305232	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29381800-29394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:29388600-29394800	Weak transcription	NHEK	skin
3	chr12:29390200-29394800	Enhancers	HUVEC	blood vessel
4	chr12:29391600-29400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:29391800-29400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:29392400-29395000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:29392400-29395400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:29392800-29396000	Enhancers	Placenta	Placenta
9	chr12:29393200-29395000	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:29393200-29396000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:29393200-29397000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:29393400-29395400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:29393400-29395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:29393400-29396000	Enhancers	Duodenum Mucosa	Duodenum
15	chr12:29393400-29396600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:29394000-29395800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr12:29394000-29395800	Enhancers	Stomach Smooth Muscle	stomach
18	chr12:29394000-29396200	Enhancers	Colonic Mucosa	Colon
19	chr12:29394000-29396200	Enhancers	NHDF-Ad	bronchial
20	chr12:29394200-29395400	Enhancers	Primary B cells from cord blood	blood
21	chr12:29394200-29396000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr12:29394200-29396200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr12:29394200-29396200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr12:29394200-29396800	Enhancers	Stomach Mucosa	stomach
25	chr12:29394400-29394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:29394400-29395000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr12:29394400-29395800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:29394400-29395800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr12:29394400-29396000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:29394400-29396200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr12:29394400-29396400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:29394400-29397600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr12:29394400-29397800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:29394600-29394800	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr12:29394600-29395000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr12:29394600-29395000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:29394600-29395000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr12:29394600-29395000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr12:29394600-29395000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr12:29394600-29395000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr12:29394600-29395000	Enhancers	Lung	lung
42	chr12:29394600-29395000	Enhancers	Small Intestine	intestine
43	chr12:29394600-29395000	Flanking Active TSS	Osteobl	bone
44	chr12:29394600-29395200	Enhancers	Fetal Stomach	stomach
45	chr12:29394600-29395200	Enhancers	Fetal Thymus	thymus
46	chr12:29394600-29395200	Enhancers	HSMMtube	muscle
47	chr12:29394600-29395400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr12:29394600-29395600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr12:29394600-29395600	Enhancers	H9 Cell Line	embryonic stem cell
50	chr12:29394600-29395600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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