Variant report
| Variant | rs10843712 |
|---|---|
| Chromosome Location | chr12:30448261-30448262 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:30448261..30450995-chr12:30458439..30460562,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251781 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10506065 | 0.98[CHD][hapmap];0.91[JPT][hapmap] |
| rs10743709 | 0.94[EUR][1000 genomes] |
| rs10771677 | 0.83[EUR][1000 genomes] |
| rs10843692 | 0.94[EUR][1000 genomes] |
| rs10843694 | 0.94[EUR][1000 genomes] |
| rs10843702 | 0.93[EUR][1000 genomes] |
| rs10843713 | 0.91[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10843714 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
| rs11050766 | 0.84[EUR][1000 genomes] |
| rs11050795 | 0.94[EUR][1000 genomes] |
| rs11050798 | 0.95[CHD][hapmap] |
| rs12229579 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12229601 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1429629 | 0.93[EUR][1000 genomes] |
| rs1429630 | 0.94[EUR][1000 genomes] |
| rs1731491 | 0.86[ASW][hapmap];0.81[LWK][hapmap] |
| rs1896899 | 0.84[EUR][1000 genomes] |
| rs1896901 | 0.94[EUR][1000 genomes] |
| rs2099146 | 0.82[EUR][1000 genomes] |
| rs2099147 | 0.91[EUR][1000 genomes] |
| rs2115684 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4423269 | 0.91[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4930916 | 0.94[EUR][1000 genomes] |
| rs4930919 | 0.94[EUR][1000 genomes] |
| rs4931313 | 0.94[EUR][1000 genomes] |
| rs4931314 | 0.94[EUR][1000 genomes] |
| rs7314953 | 0.84[EUR][1000 genomes] |
| rs7316460 | 0.94[EUR][1000 genomes] |
| rs7961939 | 0.84[EUR][1000 genomes] |
| rs7963091 | 0.94[EUR][1000 genomes] |
| rs7974311 | 0.95[EUR][1000 genomes] |
| rs7974324 | 0.95[EUR][1000 genomes] |
| rs7976976 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv821695 | chr12:30287314-30450174 | Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv832360 | chr12:30393329-30555693 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
