Variant report

Variant	rs10843713
Chromosome Location	chr12:30450326-30450327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:30448261..30450995-chr12:30458439..30460562,2	K562	blood:

Variant related genes	Relation type
ENSG00000251781	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10506065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10771683	0.97[EUR][1000 genomes]
rs10771684	0.97[EUR][1000 genomes]
rs10843688	0.93[EUR][1000 genomes]
rs10843691	0.97[EUR][1000 genomes]
rs10843693	0.97[EUR][1000 genomes]
rs10843695	0.97[EUR][1000 genomes]
rs10843696	0.97[EUR][1000 genomes]
rs10843697	0.86[EUR][1000 genomes]
rs10843698	0.87[EUR][1000 genomes]
rs10843699	0.95[EUR][1000 genomes]
rs10843700	0.97[EUR][1000 genomes]
rs10843701	0.97[EUR][1000 genomes]
rs10843712	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10843714	0.95[JPT][hapmap]
rs11050764	0.85[EUR][1000 genomes]
rs11050765	0.90[EUR][1000 genomes]
rs11050776	0.97[EUR][1000 genomes]
rs11050778	0.97[EUR][1000 genomes]
rs11050779	0.97[EUR][1000 genomes]
rs11050781	0.97[EUR][1000 genomes]
rs11050782	0.91[EUR][1000 genomes]
rs11050783	0.97[EUR][1000 genomes]
rs11050784	0.97[EUR][1000 genomes]
rs11050785	0.97[EUR][1000 genomes]
rs11050786	0.88[EUR][1000 genomes]
rs11050787	0.96[EUR][1000 genomes]
rs11050788	0.97[EUR][1000 genomes]
rs11050789	0.97[EUR][1000 genomes]
rs11050790	0.97[EUR][1000 genomes]
rs11050791	0.94[EUR][1000 genomes]
rs11050792	0.97[EUR][1000 genomes]
rs11050793	0.97[EUR][1000 genomes]
rs11050796	0.97[EUR][1000 genomes]
rs11050798	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12227866	0.97[EUR][1000 genomes]
rs12227878	0.97[EUR][1000 genomes]
rs12227920	0.97[EUR][1000 genomes]
rs12229601	0.83[ASN][1000 genomes]
rs12423648	0.96[EUR][1000 genomes]
rs1652189	0.80[AFR][1000 genomes]
rs1835250	0.97[EUR][1000 genomes]
rs1896900	0.93[EUR][1000 genomes]
rs2115684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2195539	0.97[EUR][1000 genomes]
rs2195541	0.97[EUR][1000 genomes]
rs2217388	0.97[EUR][1000 genomes]
rs2217389	0.97[EUR][1000 genomes]
rs3959962	0.97[EUR][1000 genomes]
rs4032096	0.93[EUR][1000 genomes]
rs4143644	0.97[EUR][1000 genomes]
rs4143645	0.97[EUR][1000 genomes]
rs4423269	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4457837	0.85[EUR][1000 genomes]
rs4930915	0.93[EUR][1000 genomes]
rs4930920	0.97[EUR][1000 genomes]
rs4930921	0.97[EUR][1000 genomes]
rs4931306	0.85[EUR][1000 genomes]
rs4931311	0.97[EUR][1000 genomes]
rs4931315	0.97[EUR][1000 genomes]
rs4931316	0.96[EUR][1000 genomes]
rs57590563	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30449600-30450400	Enhancers	Fetal Muscle Leg	muscle

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