Variant report

Variant	rs10843732
Chromosome Location	chr12:30518576-30518577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10771703	0.94[ASN][1000 genomes]
rs10843729	0.85[ASN][1000 genomes]
rs10843730	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11050839	0.85[ASN][1000 genomes]
rs11050840	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11050841	0.85[ASN][1000 genomes]
rs11050842	0.85[ASN][1000 genomes]
rs11050843	0.85[ASN][1000 genomes]
rs11050844	0.85[ASN][1000 genomes]
rs11050845	0.85[ASN][1000 genomes]
rs11050846	0.85[ASN][1000 genomes]
rs12579317	0.85[ASN][1000 genomes]
rs12579379	0.85[ASN][1000 genomes]
rs1588009	0.94[ASN][1000 genomes]
rs1588011	0.94[ASN][1000 genomes]
rs1613702	0.92[CEU][hapmap];0.89[CHD][hapmap];0.86[TSI][hapmap]
rs1652189	0.85[CEU][hapmap]
rs1731491	0.89[CHD][hapmap]
rs1731515	0.84[CEU][hapmap]
rs1896906	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2195542	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2351471	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2564585	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2564593	0.88[CEU][hapmap]
rs354128	0.89[ASN][1000 genomes]
rs354153	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4094863	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6487902	0.85[ASN][1000 genomes]
rs6487906	0.94[ASN][1000 genomes]
rs7138814	0.85[ASN][1000 genomes]
rs7139058	0.85[ASN][1000 genomes]
rs7139191	0.85[ASN][1000 genomes]
rs7139306	0.85[ASN][1000 genomes]
rs7309482	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7962895	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2754065	chr12:30499833-30560733	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10843732	HCK	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30517400-30518800	Enhancers	Fetal Lung	lung
2	chr12:30518400-30518800	Enhancers	Fetal Stomach	stomach

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