Variant report

Variant	rs11050844
Chromosome Location	chr12:30498892-30498893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10082751	0.94[CEU][hapmap]
rs10082827	0.93[CEU][hapmap]
rs10083054	1.00[CEU][hapmap]
rs10506066	0.94[CEU][hapmap]
rs10771703	0.91[ASN][1000 genomes]
rs10843729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843730	0.89[ASN][1000 genomes]
rs10843732	0.85[ASN][1000 genomes]
rs11050819	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs11050839	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050840	0.88[ASN][1000 genomes]
rs11050841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050846	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050855	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11050856	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11050857	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11050861	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11050862	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11050863	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11050865	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11833825	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11836218	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12578733	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12578937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12579164	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12579212	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12579259	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12579283	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12579317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579517	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12580125	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580134	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580148	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580195	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580203	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12580204	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12580209	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12580501	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12581209	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12581410	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12582064	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12582079	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12582654	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12582684	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1320922	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs1320923	1.00[CEU][hapmap]
rs1320925	1.00[CEU][hapmap]
rs1429622	0.94[CEU][hapmap];0.83[GIH][hapmap]
rs1588009	0.91[ASN][1000 genomes]
rs1588011	0.91[ASN][1000 genomes]
rs1612581	1.00[CEU][hapmap]
rs1613702	0.89[CHD][hapmap]
rs1652138	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs1652184	1.00[CEU][hapmap]
rs16906208	0.84[EUR][1000 genomes]
rs16906211	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16906270	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16906271	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16906272	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16906285	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16906287	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16906288	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16906306	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1731490	1.00[CEU][hapmap]
rs1731491	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap]
rs1731492	1.00[CEU][hapmap]
rs17464127	0.94[CEU][hapmap];0.85[GIH][hapmap];0.82[MEX][hapmap]
rs17525182	0.85[EUR][1000 genomes]
rs1827905	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1827906	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1881930	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1896906	0.91[ASN][1000 genomes]
rs2564585	0.95[ASN][1000 genomes]
rs2700023	0.94[CEU][hapmap]
rs354128	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs354153	0.95[ASN][1000 genomes]
rs35751841	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4094863	0.95[ASN][1000 genomes]
rs4536303	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6487902	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487906	0.91[ASN][1000 genomes]
rs7138814	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139058	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139191	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139306	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299777	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7309482	0.91[ASN][1000 genomes]
rs7962895	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv11198	chr12:30496609-30508640	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv20294	chr12:30498226-30501743	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30498200-30501400	Enhancers	Fetal Heart	heart
2	chr12:30498600-30499200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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