Variant report

Variant	rs17525182
Chromosome Location	chr12:30474588-30474589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10082751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10082827	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10082936	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10083054	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466815	0.81[EUR][1000 genomes]
rs10506066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10771699	0.94[ASN][1000 genomes]
rs10771700	0.94[ASN][1000 genomes]
rs10771701	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10771702	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843721	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843722	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843729	0.85[EUR][1000 genomes]
rs11050819	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050821	0.99[ASN][1000 genomes]
rs11050822	0.99[ASN][1000 genomes]
rs11050824	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050825	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050839	0.85[EUR][1000 genomes]
rs11050841	0.85[EUR][1000 genomes]
rs11050842	0.85[EUR][1000 genomes]
rs11050843	0.85[EUR][1000 genomes]
rs11050844	0.85[EUR][1000 genomes]
rs11050845	0.85[EUR][1000 genomes]
rs11050846	0.85[EUR][1000 genomes]
rs11050855	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11050856	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11050857	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11050861	0.81[AMR][1000 genomes]
rs11050862	0.81[AMR][1000 genomes]
rs11050863	0.81[AMR][1000 genomes]
rs11050865	0.81[AMR][1000 genomes]
rs11834249	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835626	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836218	0.81[AMR][1000 genomes]
rs12313162	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322792	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578380	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578733	0.81[AMR][1000 genomes]
rs12578937	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12579164	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12579212	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12579259	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12579283	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12579317	0.85[EUR][1000 genomes]
rs12579379	0.85[EUR][1000 genomes]
rs12579517	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12580125	0.81[AMR][1000 genomes]
rs12580134	0.81[AMR][1000 genomes]
rs12580148	0.81[AMR][1000 genomes]
rs12580195	0.81[AMR][1000 genomes]
rs12580203	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12580204	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12580209	0.81[AMR][1000 genomes]
rs12580501	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12580598	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580879	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581209	0.81[AMR][1000 genomes]
rs12581410	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12582064	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12582654	0.81[AMR][1000 genomes]
rs12582684	0.81[AMR][1000 genomes]
rs1320922	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1320923	0.94[CEU][hapmap]
rs1320925	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1429622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1506373	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506374	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506375	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1612581	0.92[CEU][hapmap]
rs1622965	0.81[EUR][1000 genomes]
rs1652138	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1652184	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16906208	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16906211	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16906270	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16906272	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16906285	0.81[AMR][1000 genomes]
rs16906287	0.81[AMR][1000 genomes]
rs16906288	0.81[AMR][1000 genomes]
rs16906306	0.81[AMR][1000 genomes]
rs1731490	0.94[CEU][hapmap]
rs1731491	0.94[CEU][hapmap];0.80[JPT][hapmap]
rs1731492	0.94[CEU][hapmap]
rs17464127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17522293	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1827905	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1827906	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1881930	0.81[AMR][1000 genomes]
rs2115689	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115690	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163114	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163115	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2703370	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs354128	0.81[EUR][1000 genomes]
rs354138	0.99[ASN][1000 genomes]
rs35751841	0.81[AMR][1000 genomes]
rs4032075	0.82[ASN][1000 genomes]
rs4032076	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032077	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032078	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032081	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032082	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032092	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4304873	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4304874	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426203	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536303	0.81[AMR][1000 genomes]
rs4562911	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4564417	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58747169	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487902	0.85[EUR][1000 genomes]
rs7138814	0.85[EUR][1000 genomes]
rs7139058	0.84[EUR][1000 genomes]
rs7139191	0.85[EUR][1000 genomes]
rs7139306	0.85[EUR][1000 genomes]
rs7299777	0.81[AMR][1000 genomes]
rs73287069	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358618	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358619	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7358666	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485854	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962895	0.85[EUR][1000 genomes]
rs7977589	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906114	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906115	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804786	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804787	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9805027	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv517916	chr12:30454845-30485611	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv33180	chr12:30471617-30478229	Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30471400-30476000	Weak transcription	Gastric	stomach

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