Variant report

Variant	rs10771700
Chromosome Location	chr12:30486699-30486700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10082751	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10082827	0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10082936	0.93[ASN][1000 genomes]
rs10083054	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10506066	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10771699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771701	0.89[ASN][1000 genomes]
rs10771702	0.94[ASN][1000 genomes]
rs10843721	0.94[ASN][1000 genomes]
rs10843722	0.94[ASN][1000 genomes]
rs11050819	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11050821	0.95[ASN][1000 genomes]
rs11050822	0.95[ASN][1000 genomes]
rs11050824	0.94[ASN][1000 genomes]
rs11050825	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11834249	0.94[ASN][1000 genomes]
rs11835626	0.94[ASN][1000 genomes]
rs12313162	0.94[ASN][1000 genomes]
rs12322792	0.94[ASN][1000 genomes]
rs12322860	0.94[ASN][1000 genomes]
rs12578380	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12580598	0.94[ASN][1000 genomes]
rs12580879	0.94[ASN][1000 genomes]
rs1262338	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1320922	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1320925	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1429622	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1506373	0.94[ASN][1000 genomes]
rs1506374	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1506375	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1613702	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs1652138	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1652184	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1652185	0.95[EUR][1000 genomes]
rs1652189	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs16906208	0.90[ASN][1000 genomes]
rs1731503	0.94[EUR][1000 genomes]
rs1731515	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs17464127	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17525182	0.94[ASN][1000 genomes]
rs2115689	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2115690	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2163114	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2163115	0.94[ASN][1000 genomes]
rs2564593	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2700023	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2700028	0.95[EUR][1000 genomes]
rs2703370	1.00[JPT][hapmap]
rs354134	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs354137	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs354138	0.93[ASN][1000 genomes]
rs354153	0.82[EUR][1000 genomes]
rs4032076	0.94[ASN][1000 genomes]
rs4032077	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4032078	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4032080	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4032081	0.94[ASN][1000 genomes]
rs4032082	0.94[ASN][1000 genomes]
rs4032092	0.94[ASN][1000 genomes]
rs4094863	0.82[EUR][1000 genomes]
rs4304873	0.94[ASN][1000 genomes]
rs4304874	0.94[ASN][1000 genomes]
rs4426203	0.94[ASN][1000 genomes]
rs4444166	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4562911	0.92[ASN][1000 genomes]
rs4564417	0.94[ASN][1000 genomes]
rs58747169	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73287069	0.94[ASN][1000 genomes]
rs7358618	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7358619	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7358666	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7485854	0.94[ASN][1000 genomes]
rs7977589	0.94[ASN][1000 genomes]
rs906114	0.94[ASN][1000 genomes]
rs906115	0.94[ASN][1000 genomes]
rs9804786	0.94[ASN][1000 genomes]
rs9804787	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9805027	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv558013	chr12:30478371-30491382	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv558014	chr12:30478371-30492671	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30484600-30490400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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