Variant report

Variant	rs2700023
Chromosome Location	chr12:30452667-30452668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10082751	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10082827	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10082936	0.93[ASN][1000 genomes]
rs10083054	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10466815	0.90[EUR][1000 genomes]
rs10506066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10771699	0.88[ASN][1000 genomes]
rs10771700	0.88[ASN][1000 genomes]
rs10771701	0.88[ASN][1000 genomes]
rs10771702	0.94[ASN][1000 genomes]
rs10843721	0.94[ASN][1000 genomes]
rs10843722	0.94[ASN][1000 genomes]
rs11050819	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11050821	0.93[ASN][1000 genomes]
rs11050822	0.93[ASN][1000 genomes]
rs11050824	0.94[ASN][1000 genomes]
rs11050825	0.94[ASN][1000 genomes]
rs11834249	0.94[ASN][1000 genomes]
rs11835626	0.94[ASN][1000 genomes]
rs12313162	0.94[ASN][1000 genomes]
rs12317825	0.87[EUR][1000 genomes]
rs12322792	0.94[ASN][1000 genomes]
rs12322860	0.94[ASN][1000 genomes]
rs12578380	0.94[ASN][1000 genomes]
rs12580598	0.94[ASN][1000 genomes]
rs12580879	0.94[ASN][1000 genomes]
rs1320922	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1320923	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1320925	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429636	0.84[EUR][1000 genomes]
rs1506373	0.94[ASN][1000 genomes]
rs1506374	0.94[ASN][1000 genomes]
rs1506375	0.94[ASN][1000 genomes]
rs1612581	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1612791	0.85[EUR][1000 genomes]
rs1612949	0.85[EUR][1000 genomes]
rs1622965	0.90[EUR][1000 genomes]
rs1652138	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1652184	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1652186	0.85[EUR][1000 genomes]
rs1652187	0.83[EUR][1000 genomes]
rs1652188	0.85[EUR][1000 genomes]
rs1652191	0.85[EUR][1000 genomes]
rs1652193	0.84[EUR][1000 genomes]
rs16906208	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16906211	0.86[EUR][1000 genomes]
rs1731490	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1731491	0.94[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs1731492	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1731493	0.85[EUR][1000 genomes]
rs1731500	0.84[EUR][1000 genomes]
rs17464127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522293	0.89[EUR][1000 genomes]
rs17525182	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2115689	0.94[ASN][1000 genomes]
rs2115690	0.94[ASN][1000 genomes]
rs2163114	0.94[ASN][1000 genomes]
rs2163115	0.94[ASN][1000 genomes]
rs2564526	0.84[EUR][1000 genomes]
rs2564527	0.86[EUR][1000 genomes]
rs2700026	0.85[EUR][1000 genomes]
rs2700034	0.88[EUR][1000 genomes]
rs2703363	0.86[EUR][1000 genomes]
rs2703370	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs354138	0.93[ASN][1000 genomes]
rs4032076	0.94[ASN][1000 genomes]
rs4032077	0.94[ASN][1000 genomes]
rs4032078	0.94[ASN][1000 genomes]
rs4032081	0.94[ASN][1000 genomes]
rs4032082	0.94[ASN][1000 genomes]
rs4032092	0.94[ASN][1000 genomes]
rs4304873	0.94[ASN][1000 genomes]
rs4304874	0.94[ASN][1000 genomes]
rs4426203	0.94[ASN][1000 genomes]
rs4444166	0.94[ASN][1000 genomes]
rs4562911	0.92[ASN][1000 genomes]
rs4564417	0.94[ASN][1000 genomes]
rs58747169	0.94[ASN][1000 genomes]
rs73287069	0.94[ASN][1000 genomes]
rs7358618	0.94[ASN][1000 genomes]
rs7358619	0.92[ASN][1000 genomes]
rs7358666	0.94[ASN][1000 genomes]
rs7485854	0.94[ASN][1000 genomes]
rs7977589	0.94[ASN][1000 genomes]
rs906114	0.94[ASN][1000 genomes]
rs906115	0.94[ASN][1000 genomes]
rs9804786	0.94[ASN][1000 genomes]
rs9804787	0.94[ASN][1000 genomes]
rs9805027	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links