Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082751	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs10082827	0.85[CEU][hapmap];0.92[CHB][hapmap]
rs10083054	0.94[CEU][hapmap];0.93[CHB][hapmap]
rs10466815	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506066	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11050819	0.94[CEU][hapmap];0.93[CHB][hapmap]
rs12317825	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320922	0.94[CEU][hapmap];0.92[CHB][hapmap]
rs1320923	0.94[CEU][hapmap]
rs1320925	0.94[CEU][hapmap];0.93[CHB][hapmap]
rs1429622	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs1612581	0.92[CEU][hapmap]
rs1622965	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1652138	0.87[CEU][hapmap];0.92[CHB][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs1652184	0.93[CEU][hapmap];0.93[CHB][hapmap]
rs1731490	0.94[CEU][hapmap]
rs1731491	0.94[CEU][hapmap]
rs1731492	0.94[CEU][hapmap]
rs17464127	0.86[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17525182	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2700023	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs2700034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4099930	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv430465	chr12:30377630-30422833	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv832360	chr12:30393329-30555693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1042966	chr12:30420183-30439329	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30421200-30422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:30421800-30423800	Enhancers	Fetal Stomach	stomach
3	chr12:30421800-30424200	Enhancers	Fetal Lung	lung

Quick Search: