Variant report

Variant	rs10844233
Chromosome Location	chr12:9785225-9785226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:9785140-9785290	GM12870	blood:	n/a	n/a
2	CTCF	chr12:9785160-9785310	HCPEpiC	choroid plexus:	n/a	n/a
3	CTCF	chr12:9785224-9785238	GM19238	blood:	n/a	n/a
4	CTCF	chr12:9785160-9785310	HepG2	liver:	n/a	n/a
5	CTCF	chr12:9785120-9785270	GM12872	blood:	n/a	n/a
6	CTCF	chr12:9785100-9785250	AG04449	skin:	n/a	n/a

Variant related genes	Relation type
ENSG00000256594	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10743789	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771926	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10771927	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10771929	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10771930	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10771935	0.88[ASN][1000 genomes]
rs10771936	0.93[ASN][1000 genomes]
rs10771947	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844160	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10844161	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10844191	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844196	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844206	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844225	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844269	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11051877	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051879	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051959	0.93[ASN][1000 genomes]
rs11052008	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052013	0.91[ASN][1000 genomes]
rs11052027	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052031	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12301481	0.95[ASN][1000 genomes]
rs12308360	0.95[ASN][1000 genomes]
rs12321613	0.93[ASN][1000 genomes]
rs12580472	0.90[ASN][1000 genomes]
rs1529418	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529419	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1863876	0.92[ASN][1000 genomes]
rs1987426	0.95[ASN][1000 genomes]
rs2401386	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35721310	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486710	0.92[ASN][1000 genomes]
rs4763675	0.91[ASN][1000 genomes]
rs4763678	0.86[ASN][1000 genomes]
rs4763715	0.82[ASN][1000 genomes]
rs4763716	0.84[ASN][1000 genomes]
rs4763717	0.82[ASN][1000 genomes]
rs5023032	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60416399	0.91[ASN][1000 genomes]
rs6488042	0.86[ASN][1000 genomes]
rs6488054	0.93[ASN][1000 genomes]
rs66927586	0.95[ASN][1000 genomes]
rs7132715	0.89[ASN][1000 genomes]
rs7138619	0.96[ASN][1000 genomes]
rs72656628	0.93[ASN][1000 genomes]
rs72656629	0.86[ASN][1000 genomes]
rs7301291	0.92[ASN][1000 genomes]
rs7302021	0.85[ASN][1000 genomes]
rs7310367	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311954	0.92[ASN][1000 genomes]
rs7314188	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7954289	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7978641	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
4	esv1821732	chr12:9560087-9830668	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1823760	chr12:9560087-9830668	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv428271	chr12:9560087-9830668	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv2757489	chr12:9583455-9810764	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv917178	chr12:9637315-9820153	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9770200-9786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:9771600-9794200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:9771600-9799200	Weak transcription	Fetal Lung	lung
4	chr12:9778000-9785400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:9778200-9785400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:9778200-9787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:9782400-9787200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:9784600-9789600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:9784800-9786800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr12:9784800-9788800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:9784800-9792000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:9785000-9787000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:9785000-9788800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr12:9785200-9786000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:9785200-9786200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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