Variant report

Variant	rs72656629
Chromosome Location	chr12:9791702-9791703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9786143..9793024-chr12:9797652..9803573,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256594	Chromatin interaction
ENSG00000256442	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10743789	0.85[ASN][1000 genomes]
rs10771927	0.84[ASN][1000 genomes]
rs10771929	0.84[ASN][1000 genomes]
rs10771930	0.84[ASN][1000 genomes]
rs10771947	0.86[ASN][1000 genomes]
rs10844160	0.81[ASN][1000 genomes]
rs10844161	0.81[ASN][1000 genomes]
rs10844206	0.85[ASN][1000 genomes]
rs10844225	0.86[ASN][1000 genomes]
rs10844233	0.86[ASN][1000 genomes]
rs10844269	0.91[ASN][1000 genomes]
rs11051877	0.80[ASN][1000 genomes]
rs11051879	0.81[ASN][1000 genomes]
rs11051959	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052008	0.86[ASN][1000 genomes]
rs11052013	0.88[ASN][1000 genomes]
rs11052027	0.82[ASN][1000 genomes]
rs11052031	0.84[ASN][1000 genomes]
rs12301481	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12308360	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12321613	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1529418	0.84[ASN][1000 genomes]
rs1529419	0.82[ASN][1000 genomes]
rs1560007	0.80[AMR][1000 genomes]
rs1863876	0.89[ASN][1000 genomes]
rs1987426	0.91[ASN][1000 genomes]
rs2401386	0.88[ASN][1000 genomes]
rs35721310	0.86[ASN][1000 genomes]
rs4486710	0.88[ASN][1000 genomes]
rs4763675	0.87[ASN][1000 genomes]
rs4763678	0.83[ASN][1000 genomes]
rs4763715	0.96[ASN][1000 genomes]
rs4763716	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4763717	0.96[ASN][1000 genomes]
rs5023032	0.84[ASN][1000 genomes]
rs60416399	0.88[ASN][1000 genomes]
rs6488054	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66927586	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7132715	0.91[ASN][1000 genomes]
rs7138619	0.82[ASN][1000 genomes]
rs72656628	0.89[ASN][1000 genomes]
rs7299076	0.93[AMR][1000 genomes]
rs7301291	0.88[ASN][1000 genomes]
rs7302021	0.81[ASN][1000 genomes]
rs7310367	0.86[ASN][1000 genomes]
rs7314188	0.84[ASN][1000 genomes]
rs7954289	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
4	esv1821732	chr12:9560087-9830668	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1823760	chr12:9560087-9830668	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv428271	chr12:9560087-9830668	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv2757489	chr12:9583455-9810764	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv917178	chr12:9637315-9820153	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv983280	chr12:9787339-9796334	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9771600-9794200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:9771600-9799200	Weak transcription	Fetal Lung	lung
3	chr12:9784800-9792000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:9785400-9799400	Weak transcription	Fetal Brain Male	brain
5	chr12:9786800-9792000	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:9787400-9799800	Weak transcription	Pancreas	Pancrea
7	chr12:9787600-9796200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:9788000-9795000	Weak transcription	Dnd41	blood
9	chr12:9788400-9795600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:9788800-9792600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:9788800-9794200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:9789800-9794200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:9790000-9792000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr12:9790000-9792200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:9790000-9796000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:9790200-9792000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:9790200-9792400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr12:9790400-9792000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr12:9790400-9792200	Enhancers	Primary B cells from cord blood	blood
20	chr12:9790400-9793200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:9790400-9797600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:9790600-9791800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr12:9790600-9792000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:9790600-9792000	Enhancers	HMEC	breast
25	chr12:9790800-9791800	Enhancers	Primary T cells from cord blood	blood
26	chr12:9791000-9791800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:9791000-9792000	Enhancers	NHEK	skin
28	chr12:9791000-9797600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:9791200-9791800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr12:9791400-9792000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr12:9791400-9795600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:9791600-9792000	Enhancers	Placenta	Placenta
33	chr12:9791600-9792200	Enhancers	Hela-S3	cervix
34	chr12:9791600-9799400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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