Variant report

Variant	rs10844433
Chromosome Location	chr12:33190230-33190231
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33179128..33181931-chr12:33189282..33192289,3	MCF-7	breast:
2	chr12:33189309..33192081-chr12:33194448..33196554,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238911	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10844423	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10844425	0.86[EUR][1000 genomes]
rs10844430	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11052365	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11052381	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052383	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052394	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11052402	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052414	0.80[ASN][1000 genomes]
rs11832561	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12227331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12227500	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12227524	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12230100	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12231642	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12231850	0.83[JPT][hapmap]
rs12578358	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12814889	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1500057	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1500065	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846634	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133675	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs35273601	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36061762	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460898	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58643342	0.88[ASN][1000 genomes]
rs7138816	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7138830	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295550	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295685	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7297914	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298037	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298039	0.95[ASN][1000 genomes]
rs7299289	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7309901	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7313565	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7313567	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7313974	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314555	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7315691	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9668952	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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