Variant report

Variant	rs58643342
Chromosome Location	chr12:33132542-33132543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33132215..33134574-chr12:33135484..33138415,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10844423	0.90[ASN][1000 genomes]
rs10844425	0.84[EUR][1000 genomes]
rs10844430	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844433	0.88[ASN][1000 genomes]
rs11052365	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11052381	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052383	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052394	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11052402	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11832561	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12227331	0.89[ASN][1000 genomes]
rs12227524	0.81[EUR][1000 genomes]
rs12230100	0.87[ASN][1000 genomes]
rs12231642	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12578358	0.81[EUR][1000 genomes]
rs12809620	0.80[EUR][1000 genomes]
rs12826810	0.80[EUR][1000 genomes]
rs12827499	0.80[EUR][1000 genomes]
rs1500057	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500065	0.88[ASN][1000 genomes]
rs1818059	0.86[EUR][1000 genomes]
rs1846634	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35273601	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36061762	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4460898	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7138830	0.82[ASN][1000 genomes]
rs7295550	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7295685	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7297914	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7298037	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7298039	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7299289	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7309901	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7313565	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7313567	0.90[ASN][1000 genomes]
rs7313974	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7314555	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7315691	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33131600-33136200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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